TCONS_00045431 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045431
Unique NameTCONS_00045431
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045431 ID=TCONS_00045431|Name=TCONS_00045431|organism=Clytia hemisphaerica|type=transcript|length=708bp
GACTGTTTCTTTATCCatctatttttttgttaatagattagaaaaaaaag
atatttcaaaatggCTTGTTTGGGTTGTAATGATTTTTCTGTCGGCTTAG
GTATCTTTCCAATTCTATTTTGTGTTGTTTCTGCGCTCACATTTTTAACA
ACGTACATGATAGCAGTCAGTAACAATCATTTGTATCCATGGTTACCCAC
TATCAGTGATACAGGGGGTGATAAACCAGAAGCCAATattttcagtcttt
ttctaAGCATAAGTAGTTTCCTATGCTTAATAGTGACTTACATTCGCTAC
CGGCAATTTAATTTCATCTCTGATGGAATCAGGGGTGTGACTTATGCAAC
TCGTTTCACTTGTTGCAATAAAGCATCATTTGTAACTGGTATCGTTGCGT
CAGTTGGAGCTGGAATTGTTGCTTCATTTCAGGTATTAATATTAACAATT
AACGTTTTTTGTAATTCTGCAAAAAGGCCccttaattttgtcaaaatctt
TTGATTCCGAGAAAAGGAATGGTTAGGGTCttaaaaattgccttaaaaag
GATTCTTGCTGACTCAAATTTACTAGGGAAAGAGTTTCAAAAGGTCTGTG
GCGATAgtgtgaacagcaacaaaagtTCTGTGTTTTTTTAATCACTCTGT
ACTTTCAAAGGGCAGATCTGctcaatttaaaataattaagGCTAGTCTGT
ACACATGT
Run BLAST on NCBI

protein sequence of TCONS_00045431-protein

>TCONS_00045431-protein ID=TCONS_00045431-protein|Name=TCONS_00045431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MACLGCNDFSVGLGIFPILFCVVSALTFLTTYMIAVSNNHLYPWLPTISD
TGGDKPEANIFSLFLSISSFLCLIVTYIRYRQFNFISDGIRGVTYATRFT
CCNKASFVTGIVASVGAGIVASFQVLILTINVFCNSAKRPLNFVKIF
Run BLAST on NCBI

transcript from alignment at sc0007798:14..721

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045431 ID=TCONS_00045431|Name=TCONS_00045431|organism=Clytia hemisphaerica|type=transcript|length=708bp|location=Sequence derived from alignment at sc0007798:14..721 (Clytia hemisphaerica)
ACATGTGTACAGACTAGCcttaattattttaaattgagCAGATCTGCCCT
TTGAAAGTACAGAGTGATTAAAAAAACACAGAacttttgttgctgttcac
acTATCGCCACAGACCTTTTGAAACTCTTTCCCTAGTAAATTTGAGTCAG
CAAGAATCctttttaaggcaatttttaaGACCCTAACCATTCCTTTTCTC
GGAATCAAaagattttgacaaaattaaggGGCCTTTTTGCAGAATTACAA
AAAACGTTAATTGTTAATATTAATACCTGAAATGAAGCAACAATTCCAGC
TCCAACTGACGCAACGATACCAGTTACAAATGATGCTTTATTGCAACAAG
TGAAACGAGTTGCATAAGTCACACCCCTGATTCCATCAGAGATGAAATTA
AATTGCCGGTAGCGAATGTAAGTCACTATTAAGCATAGGAAACTACTTAT
GCTtagaaaaagactgaaaatATTGGCTTCTGGTTTATCACCCCCTGTAT
CACTGATAGTGGGTAACCATGGATACAAATGATTGTTACTGACTGCTATC
ATGTACGTTGTTAAAAATGTGAGCGCAGAAACAACACAAAATAGAATTGG
AAAGATACCTAAGCCGACAGAAAAATCATTACAACCCAAACAAGccattt
tgaaatatcttttttttctaatctattaacaaaaaaatagatGGATAAAG
AAACAGTC

Coding sequence (CDS) from alignment at sc0007798:14..721

>TCONS_00045431 ID=TCONS_00045431|Name=TCONS_00045431|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0007798:14..721 (Clytia hemisphaerica)
TCAAaagattttgacaaaattaaggGGCCTTTTTGCAGAATTACAAAAAA
CGTTAATTGTTAATATTAATACCTGAAATGAAGCAACAATTCCAGCTCCA
ACTGACGCAACGATACCAGTTACAAATGATGCTTTATTGCAACAAGTGAA
ACGAGTTGCATAAGTCACACCCCTGATTCCATCAGAGATGAAATTAAATT
GCCGGTAGCGAATGTAAGTCACTATTAAGCATAGGAAACTACTTATGCTt
agaaaaagactgaaaatATTGGCTTCTGGTTTATCACCCCCTGTATCACT
GATAGTGGGTAACCATGGATACAAATGATTGTTACTGACTGCTATCATGT
ACGTTGTTAAAAATGTGAGCGCAGAAACAACACAAAATAGAATTGGAAAG
ATACCTAAGCCGACAGAAAAATCATTACAACCCAAACAAGccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029009XLOC_029009Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045431-proteinTCONS_00045431-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045431-exon-sc0007798-1491911889:14..721TCONS_00045431-exon-sc0007798-1491911889:14..721Clytia hemisphaericaexon
TCONS_00045431-exon-sc0007798-1510915933:14..721TCONS_00045431-exon-sc0007798-1510915933:14..721Clytia hemisphaericaexon
TCONS_00045431-exon-sc0007798-1575043694:14..721TCONS_00045431-exon-sc0007798-1575043694:14..721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007798supercontigsc0007798:14..721 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.27049	2.14927	1.69051	1.73266	4.31456	3.33366	4.93599	3.16625	7.12961	5.34323	9.148	3.88275	13.618	11.147	10.4562	11.1778	4.32319	4.81407	13.453	13.6821	4.67441	5.23062	5.29875	6.59604	7.55711	11.9222	17.1581	12.5892	7.41781	5.06518
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019402Frag1/DRAM/Sfk1
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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