TCONS_00045412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045412
Unique NameTCONS_00045412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045412 ID=TCONS_00045412|Name=TCONS_00045412|organism=Clytia hemisphaerica|type=transcript|length=535bp
CCAGTCCTTACCAATACGAACAAAAATCGAGACCTTTCGCCAGTCCTTAC
CAATACGAACAAAATCCGACGTCACTTGCTATCGGAACTTCCATTTCCAC
AGGGAAAACCTTACAAGGAGAACGAAACTGCGTCAACCTCAAACCAAAAC
GAAACTGCGTCAACCTcaaaccaaaaccaaaatgCTTCAACCTCAAACCA
CAACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCTCAA
ACCACAACcaaaatgCTTCAACCTCAAACCACAACCAAAATGCTTCAACC
TCAAACCACAACCAAAATGCTTCAACCTCAAACCACAACAAAAAAGCTTC
AACATCGAACCACAACGAAAATGCTTCAACCTCAAAACACAACGTAACCA
CCAAAGGCTCTTACAGAATACCCAAAAGATCTAACGAAACCACAAAAAAT
GAAGACCGAATCCAATCTTTGATTGATCAGAACATTGGAAGATTCAAGCA
CcaacaaacaaacaacaaaaccacACCGAAATTGA
Run BLAST on NCBI

protein sequence of TCONS_00045412-protein

>TCONS_00045412-protein ID=TCONS_00045412-protein|Name=TCONS_00045412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
PVLTNTNKNRDLSPVLTNTNKIRRHLLSELPFPQGKPYKENETASTSNQN
ETASTSNQNQNASTSNHNQNASTSNHNQNASTSNHNQNASTSNHNQNAST
SNHNQNASTSNHNKKASTSNHNENASTSKHNVTTKGSYRIPKRSNETTKN
EDRIQSLIDQNIGRFKHQQTNNKTTPKL
Run BLAST on NCBI

transcript from alignment at sc0007758:1..595-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045412 ID=TCONS_00045412|Name=TCONS_00045412|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at sc0007758:1..595- (Clytia hemisphaerica)
CCAGTCCTTACCAATACGAACAAAAATCGAGACCTTTCGCCAGTCCTTAC
CAATACGAACAAAATCCGACGTCACTTGCTATCGGAACTTCCATTTCCAC
AGGGAAAACCTTACAAGGAGAACGAAACTGCGTCAACCTCAAACCAAAAC
GAAACTGCGTCAACCTCAAACCAAAACCAAAATGCTTCAACCTCAAACCA
CAACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCTCAA
ACCACAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TCAACCTCAAACCAAAACCAAAATGCTTCAACCTCAAACCACAACCAAAA
TGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCTCAAACCACAACA
AAAAAGCTTCAACATCGAACCACAACGAAAATGCTTCAACCTCAAAACAC
AACGTAACCACCAAAGGCTCTTACAGAATACCCAAAAGATCTAACGAAAC
CACAAAAAATGAAGACCGAATCCAATCTTTGATTGATCAGAACATTGGAA
GATTCAAGCACCAACAAACAAACAACAAAACCACACCGAAATTGA

Coding sequence (CDS) from alignment at sc0007758:1..595-

>TCONS_00045412 ID=TCONS_00045412|Name=TCONS_00045412|organism=Clytia hemisphaerica|type=CDS|length=1068bp|location=Sequence derived from alignment at sc0007758:1..595- (Clytia hemisphaerica)
CAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCTCAAACCA
CAACCAAAATGCTTCAACCTCAAACCACAACAAAAAAGCTTCAACATCGA
ACCACAACGAAAATGCTTCAACCTCAAAACACAACGTAACCACCAAAGGC
TCTTACAGAATACCCAAAAGATCTAACGAAACCACAAAAAATGAAGACCG
AATCCAATCTTTGATTGATCAGAACATTGGAAGATTCAAGCACCAACAAA
CAAACAACAAAACCACACCGAAATTGCCAGTCCTTACCAATACGAACAAA
AATCGAGACCTTTCGCCAGTCCTTACCAATACGAACAAAATCCGACGTCA
CTTGCTATCGGAACTTCCATTTCCACAGGGAAAACCTTACAAGGAGAACG
AAACTGCGTCAACCTCAAACCAAAACGAAACTGCGTCAACCTCAAACCAA
AACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCTCAAA
CCACAACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCT
CAAACCACAACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCA
ACCTCAAACCACAACAAAAAAGCTTCAACATCGAACCACAACGAAAATGC
TTCAACCTCAAAACACAACGTAACCACCAAAGGCTCTTACAGAATACCCA
AAAGATCTAACGAAACCACAAAAAATGAAGACCGAATCCAATCTTTGATT
GATCAGAACATTGGAAGATTCAAGCACCAACAAACAAACAACAAAACCAC
ACCGAAATTGCCAGTCCTTACCAATACGAACAAAAATCGAGACCTTTCGC
CAGTCCTTACCAATACGAACAAAATCCGACGTCACTTGCTATCGGAACTT
CCATTTCCACAGGGAAAACCTTACAAGGAGAACGAAACTGCGTCAACCTC
AAACCAAAACGAAACTGCGTCAACCTCAAACCAAAACCAAAATGCTTCAA
CCTCAAACCACAACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCT
TCAACCTCAAACCACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028991XLOC_028991Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045412-proteinTCONS_00045412-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045412-exon-sc0007758-1575043694:338..595TCONS_00045412-exon-sc0007758-1575043694:338..595Clytia hemisphaericaexon
TCONS_00045412-exon-sc0007758-1575043694:1..277TCONS_00045412-exon-sc0007758-1575043694:1..277Clytia hemisphaericaexon
TCONS_00045412-exon-sc0007758-1510915933:338..595TCONS_00045412-exon-sc0007758-1510915933:338..595Clytia hemisphaericaexon
TCONS_00045412-exon-sc0007758-1510915933:1..277TCONS_00045412-exon-sc0007758-1510915933:1..277Clytia hemisphaericaexon
TCONS_00045412-exon-sc0007758-1491911889:338..595TCONS_00045412-exon-sc0007758-1491911889:338..595Clytia hemisphaericaexon
TCONS_00045412-exon-sc0007758-1491911889:1..277TCONS_00045412-exon-sc0007758-1491911889:1..277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007758supercontigsc0007758:1..595 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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