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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045412 ID=TCONS_00045412|Name=TCONS_00045412|organism=Clytia hemisphaerica|type=transcript|length=535bp
CCAGTCCTTACCAATACGAACAAAAATCGAGACCTTTCGCCAGTCCTTAC
CAATACGAACAAAATCCGACGTCACTTGCTATCGGAACTTCCATTTCCAC
AGGGAAAACCTTACAAGGAGAACGAAACTGCGTCAACCTCAAACCAAAAC
GAAACTGCGTCAACCTcaaaccaaaaccaaaatgCTTCAACCTCAAACCA
CAACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCTCAA
ACCACAACcaaaatgCTTCAACCTCAAACCACAACCAAAATGCTTCAACC
TCAAACCACAACCAAAATGCTTCAACCTCAAACCACAACAAAAAAGCTTC
AACATCGAACCACAACGAAAATGCTTCAACCTCAAAACACAACGTAACCA
CCAAAGGCTCTTACAGAATACCCAAAAGATCTAACGAAACCACAAAAAAT
GAAGACCGAATCCAATCTTTGATTGATCAGAACATTGGAAGATTCAAGCA
CcaacaaacaaacaacaaaaccacACCGAAATTGA Run BLAST on NCBI protein sequence of TCONS_00045412-protein >TCONS_00045412-protein ID=TCONS_00045412-protein|Name=TCONS_00045412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
PVLTNTNKNRDLSPVLTNTNKIRRHLLSELPFPQGKPYKENETASTSNQN
ETASTSNQNQNASTSNHNQNASTSNHNQNASTSNHNQNASTSNHNQNAST
SNHNQNASTSNHNKKASTSNHNENASTSKHNVTTKGSYRIPKRSNETTKN
EDRIQSLIDQNIGRFKHQQTNNKTTPKL Run BLAST on NCBI transcript from alignment at sc0007758:1..595- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045412 ID=TCONS_00045412|Name=TCONS_00045412|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at sc0007758:1..595- (Clytia hemisphaerica)
CCAGTCCTTACCAATACGAACAAAAATCGAGACCTTTCGCCAGTCCTTAC
CAATACGAACAAAATCCGACGTCACTTGCTATCGGAACTTCCATTTCCAC
AGGGAAAACCTTACAAGGAGAACGAAACTGCGTCAACCTCAAACCAAAAC
GAAACTGCGTCAACCTCAAACCAAAACCAAAATGCTTCAACCTCAAACCA
CAACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCTCAA
ACCACAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TCAACCTCAAACCAAAACCAAAATGCTTCAACCTCAAACCACAACCAAAA
TGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCTCAAACCACAACA
AAAAAGCTTCAACATCGAACCACAACGAAAATGCTTCAACCTCAAAACAC
AACGTAACCACCAAAGGCTCTTACAGAATACCCAAAAGATCTAACGAAAC
CACAAAAAATGAAGACCGAATCCAATCTTTGATTGATCAGAACATTGGAA
GATTCAAGCACCAACAAACAAACAACAAAACCACACCGAAATTGA Coding sequence (CDS) from alignment at sc0007758:1..595- >TCONS_00045412 ID=TCONS_00045412|Name=TCONS_00045412|organism=Clytia hemisphaerica|type=CDS|length=1068bp|location=Sequence derived from alignment at sc0007758:1..595- (Clytia hemisphaerica)
CAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCTCAAACCA
CAACCAAAATGCTTCAACCTCAAACCACAACAAAAAAGCTTCAACATCGA
ACCACAACGAAAATGCTTCAACCTCAAAACACAACGTAACCACCAAAGGC
TCTTACAGAATACCCAAAAGATCTAACGAAACCACAAAAAATGAAGACCG
AATCCAATCTTTGATTGATCAGAACATTGGAAGATTCAAGCACCAACAAA
CAAACAACAAAACCACACCGAAATTGCCAGTCCTTACCAATACGAACAAA
AATCGAGACCTTTCGCCAGTCCTTACCAATACGAACAAAATCCGACGTCA
CTTGCTATCGGAACTTCCATTTCCACAGGGAAAACCTTACAAGGAGAACG
AAACTGCGTCAACCTCAAACCAAAACGAAACTGCGTCAACCTCAAACCAA
AACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCTCAAA
CCACAACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCT
CAAACCACAACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCA
ACCTCAAACCACAACAAAAAAGCTTCAACATCGAACCACAACGAAAATGC
TTCAACCTCAAAACACAACGTAACCACCAAAGGCTCTTACAGAATACCCA
AAAGATCTAACGAAACCACAAAAAATGAAGACCGAATCCAATCTTTGATT
GATCAGAACATTGGAAGATTCAAGCACCAACAAACAAACAACAAAACCAC
ACCGAAATTGCCAGTCCTTACCAATACGAACAAAAATCGAGACCTTTCGC
CAGTCCTTACCAATACGAACAAAATCCGACGTCACTTGCTATCGGAACTT
CCATTTCCACAGGGAAAACCTTACAAGGAGAACGAAACTGCGTCAACCTC
AAACCAAAACGAAACTGCGTCAACCTCAAACCAAAACCAAAATGCTTCAA
CCTCAAACCACAACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCT
TCAACCTCAAACCACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045412-exon-sc0007758-1575043694:338..595 | TCONS_00045412-exon-sc0007758-1575043694:338..595 | Clytia hemisphaerica | exon |
| TCONS_00045412-exon-sc0007758-1575043694:1..277 | TCONS_00045412-exon-sc0007758-1575043694:1..277 | Clytia hemisphaerica | exon |
| TCONS_00045412-exon-sc0007758-1510915933:338..595 | TCONS_00045412-exon-sc0007758-1510915933:338..595 | Clytia hemisphaerica | exon |
| TCONS_00045412-exon-sc0007758-1510915933:1..277 | TCONS_00045412-exon-sc0007758-1510915933:1..277 | Clytia hemisphaerica | exon |
| TCONS_00045412-exon-sc0007758-1491911889:338..595 | TCONS_00045412-exon-sc0007758-1491911889:338..595 | Clytia hemisphaerica | exon |
| TCONS_00045412-exon-sc0007758-1491911889:1..277 | TCONS_00045412-exon-sc0007758-1491911889:1..277 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0007758 | supercontig | sc0007758:1..595 - |
Blast
The following BLAST results are available for this feature:
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