TCONS_00045411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045411
Unique NameTCONS_00045411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045411 ID=TCONS_00045411|Name=TCONS_00045411|organism=Clytia hemisphaerica|type=transcript|length=508bp
CCAGTCCTTACCAATACGAACAAAAATCGAGACCTTTCGCCAGTCCTTAC
CAATACGAACAAAATCCGACGTCACTTGCTATCGGAACTTCCATTTCCAC
AGGGAAAACCTTACAAGGAGAACGAAACTGCGTCAACCTCAAACCAAAAC
GAAACTGCGTCAACCTcaaaccaaaaccaaaatgCTTCAACCTCAAACCA
CAACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCTCAA
ACCACAACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCAACC
TCAAACCACAACAAAAAAGCTTCAACATCGAACCACAACGAAAATGCTTC
AACCTCAAAACACAACGTAACCACCAAAGGCTCTTACAGAATACCCAAAA
GATCTAACGAAACCACAAAAAATGAAGACCGAATCCAATCTTTGATTGAT
CAGAACATTGGAAGATTCAAGCACcaacaaacaaacaacaaaaccacACC
GAAATTGA
Run BLAST on NCBI

transcript from alignment at sc0007758:1..595-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045411 ID=TCONS_00045411|Name=TCONS_00045411|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at sc0007758:1..595- (Clytia hemisphaerica)
CCAGTCCTTACCAATACGAACAAAAATCGAGACCTTTCGCCAGTCCTTAC
CAATACGAACAAAATCCGACGTCACTTGCTATCGGAACTTCCATTTCCAC
AGGGAAAACCTTACAAGGAGAACGAAACTGCGTCAACCTCAAACCAAAAC
GAAACTGCGTCAACCTCAAACCAAAACCAAAATGCTTCAACCTCAAACCA
CAACCAAAATGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCTCAA
ACCACAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TCAACCTCAAACCAAAACCAAAATGCTTCAACCTCAAACCACAACCAAAA
TGCTTCAACCTCAAACCACAACCAAAATGCTTCAACCTCAAACCACAACA
AAAAAGCTTCAACATCGAACCACAACGAAAATGCTTCAACCTCAAAACAC
AACGTAACCACCAAAGGCTCTTACAGAATACCCAAAAGATCTAACGAAAC
CACAAAAAATGAAGACCGAATCCAATCTTTGATTGATCAGAACATTGGAA
GATTCAAGCACCAACAAACAAACAACAAAACCACACCGAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028991XLOC_028991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045411-exon-sc0007758-1575043694:338..595TCONS_00045411-exon-sc0007758-1575043694:338..595Clytia hemisphaericaexon
TCONS_00045411-exon-sc0007758-1575043694:1..250TCONS_00045411-exon-sc0007758-1575043694:1..250Clytia hemisphaericaexon
TCONS_00045411-exon-sc0007758-1510915933:338..595TCONS_00045411-exon-sc0007758-1510915933:338..595Clytia hemisphaericaexon
TCONS_00045411-exon-sc0007758-1510915933:1..250TCONS_00045411-exon-sc0007758-1510915933:1..250Clytia hemisphaericaexon
TCONS_00045411-exon-sc0007758-1491911889:338..595TCONS_00045411-exon-sc0007758-1491911889:338..595Clytia hemisphaericaexon
TCONS_00045411-exon-sc0007758-1491911889:1..250TCONS_00045411-exon-sc0007758-1491911889:1..250Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007758supercontigsc0007758:1..595 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.474619	0	0.268694	0.367771	0.191229	0	2.72327	0.771271	0.745419	1.34729	0.698763	0	5.66094	5.09698	1.68124	1.24275	1.10964	0.432055	5.54319	2.16035	0.803054	0.374881	0	0.944712	1.17315	0.907075	0	0.520911	0	0.670894
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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