TCONS_00045406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045406
Unique NameTCONS_00045406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045406 ID=TCONS_00045406|Name=TCONS_00045406|organism=Clytia hemisphaerica|type=transcript|length=574bp
TAAAAGATAAATTACGTGCTGTTGGCAATGTCTTTCTAACTAAACGTGAA
GTATCGACTCATGAAGCTANAAGAAATATGAGTGAACTCATGAAAAAGGC
ACACAAAGAAGCATCCGGAAAAGATGTAAAAGATAAATTACGTGCTGTTG
GCAATGTCTTTCTAACTAAACGTGAAGTATCGACTCATGAAGCTATCAAG
CGAACGCTGTCTTTAAAAATGAGAACTTCTAATATCAATGTAGAATTTGT
TATAACAGGCCCAAAAGAAAAACGTACGCGAATTCTGAAAAGTCCATCTG
AACTAGCAAAACTTGATCCagattccaaaaatatttacaaaaacagTATG
TTCGACAAGTATCAGAATCGTCCTAACAAATTAAAAGATATGTGCTTAGC
AGACTTTGCTTCTATTTATACGtacccaaaaaaaaaagaaaatgaataat
AGAAGAAGCAAACGAAACAGATGATGAAATAAACGAAACTCTAGAAATAG
ATGACAATGCTCCAAAAACTATTACATTGAAAAACGGAAtgggaaaaatg
agaaaacgaAGTCGTCCATGCGTA
Run BLAST on NCBI

protein sequence of TCONS_00045406-protein

>TCONS_00045406-protein ID=TCONS_00045406-protein|Name=TCONS_00045406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
KDKLRAVGNVFLTKREVSTHEAXRNMSELMKKAHKEASGKDVKDKLRAVG
NVFLTKREVSTHEAIKRTLSLKMRTSNINVEFVITGPKEKRTRILKSPSE
LAKLDPDSKNIYKNSMFDKYQNRPNKLKDMCLADFASIYTYPKKKENE
Run BLAST on NCBI

transcript from alignment at sc0007745:2..575

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045406 ID=TCONS_00045406|Name=TCONS_00045406|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at sc0007745:2..575 (Clytia hemisphaerica)
TACGCATGGACGACTtcgttttctcatttttcccaTTCCGTTTTTCAATG
TAATAGTTTTTGGAGCATTGTCATCTATTTCTAGAGTTTCGTTTATTTCA
TCATCTGTTTCGTTTGCTTCTTCTattattcattttcttttttttttggg
taCGTATAAATAGAAGCAAAGTCTGCTAAGCACATATCTTTTAATTTGTT
AGGACGATTCTGATACTTGTCGAACATActgtttttgtaaatatttttgg
aatctGGATCAAGTTTTGCTAGTTCAGATGGACTTTTCAGAATTCGCGTA
CGTTTTTCTTTTGGGCCTGTTATAACAAATTCTACATTGATATTAGAAGT
TCTCATTTTTAAAGACAGCGTTCGCTTGATAGCTTCATGAGTCGATACTT
CACGTTTAGTTAGAAAGACATTGCCAACAGCACGTAATTTATCTTTTACA
TCTTTTCCGGATGCTTCTTTGTGTGCCTTTTTCATGAGTTCACTCATATT
TCTTNTAGCTTCATGAGTCGATACTTCACGTTTAGTTAGAAAGACATTGC
CAACAGCACGTAATTTATCTTTTA

Coding sequence (CDS) from alignment at sc0007745:2..575

>TCONS_00045406 ID=TCONS_00045406|Name=TCONS_00045406|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0007745:2..575 (Clytia hemisphaerica)
ttattcattttcttttttttttgggtaCGTATAAATAGAAGCAAAGTCTG
CTAAGCACATATCTTTTAATTTGTTAGGACGATTCTGATACTTGTCGAAC
ATActgtttttgtaaatatttttggaatctGGATCAAGTTTTGCTAGTTC
AGATGGACTTTTCAGAATTCGCGTACGTTTTTCTTTTGGGCCTGTTATAA
CAAATTCTACATTGATATTAGAAGTTCTCATTTTTAAAGACAGCGTTCGC
TTGATAGCTTCATGAGTCGATACTTCACGTTTAGTTAGAAAGACATTGCC
AACAGCACGTAATTTATCTTTTACATCTTTTCCGGATGCTTCTTTGTGTG
CCTTTTTCATGAGTTCACTCATATTTCTTNTAGCTTCATGAGTCGATACT
TCACGTTTAGTTAGAAAGACATTGCCAACAGCACGTAATTTATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028986XLOC_028986Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045406-proteinTCONS_00045406-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045406-exon-sc0007745-1491911889:2..575TCONS_00045406-exon-sc0007745-1491911889:2..575Clytia hemisphaericaexon
TCONS_00045406-exon-sc0007745-1510915933:2..575TCONS_00045406-exon-sc0007745-1510915933:2..575Clytia hemisphaericaexon
TCONS_00045406-exon-sc0007745-1575043694:2..575TCONS_00045406-exon-sc0007745-1575043694:2..575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007745supercontigsc0007745:2..575 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40485	1.34219	1.33082	1.58907	1.34123	0.627253	0.946885	1.48992	1.29339	0.742032	0.32753	0.965198	0.4335	0.268535	0.492403	0.280227	0.455953	0.338111	0.103325	0.277205	0.653187	0.442549	0.468841	0.395011	1.24431	1.87779	1.58151	1.14494	0.975974	0.564782
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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