TCONS_00045399 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045399
Unique NameTCONS_00045399
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045399 ID=TCONS_00045399|Name=TCONS_00045399|organism=Clytia hemisphaerica|type=transcript|length=259bp
CAGAAAAGCCAGCAAGTAATTCTGAAAAGAATTGCATTGCGTTATTGCAC
GAGTTTTGTCAACGAGAAGGTTGGACGCAACCTTTCGACTCCGTTGTTGA
GGAGTGCGGTGTTGTGCATGAACGCATATTCAAAATGAGGTACAGTTTGG
CAGGTTTCAACTTTCCTTGTGGAATTGGTGAAAATAAAGATGTAGCAAGG
AGGAGGGCGGCTGGTCAAGCACTGGCTATCATGAAAAATATGGACGTTCG
AGGTATTCA
Run BLAST on NCBI

transcript from alignment at sc0007725:253..745-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045399 ID=TCONS_00045399|Name=TCONS_00045399|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at sc0007725:253..745- (Clytia hemisphaerica)
CAGAAAAGCCAGCAAGTAATTCTGAAAAGAATTGCATTGCGTTATTGCAC
GAGTTTTGTCAACGAGAAGGTTGGACGCAACCTTTCGACTCCGTTGTTGA
GGAGTGCGGTGTTGTGCATGAACGCATATTCAAAATGAGGTGCATTTCGT
CATCAAACTGTTTTACTTATCAGTAATTTTTAAGAATTCTCACATCAAAA
ACTGTCAAAGATGCCTAATTGTTTTGTCCTTTTATGAAAGTAAACTTAAA
CGTCATAAAGCAGGACATGACCTTTCAGTTTAACACGAAACAAAAAATCG
ANAGTAAACTTAAACGTCATAAAGCAGGACATGACCTTTCAGTTTAACAC
GAAACAAAAAATCGACTTTTCAGGTACAGTTTGGCAGGTTTCAACTTTCC
TTGTGGAATTGGTGAAAATAAAGATGTAGCAAGGAGGAGGGCGGCTGGTC
AAGCACTGGCTATCATGAAAAATATGGACGTTCGAGGTATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028979XLOC_028979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045399-exon-sc0007725-1575043694:607..745TCONS_00045399-exon-sc0007725-1575043694:607..745Clytia hemisphaericaexon
TCONS_00045399-exon-sc0007725-1575043694:253..372TCONS_00045399-exon-sc0007725-1575043694:253..372Clytia hemisphaericaexon
TCONS_00045399-exon-sc0007725-1510915933:607..745TCONS_00045399-exon-sc0007725-1510915933:607..745Clytia hemisphaericaexon
TCONS_00045399-exon-sc0007725-1510915933:253..372TCONS_00045399-exon-sc0007725-1510915933:253..372Clytia hemisphaericaexon
TCONS_00045399-exon-sc0007725-1491911889:607..745TCONS_00045399-exon-sc0007725-1491911889:607..745Clytia hemisphaericaexon
TCONS_00045399-exon-sc0007725-1491911889:253..372TCONS_00045399-exon-sc0007725-1491911889:253..372Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007725supercontigsc0007725:253..745 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.6637	15.5994	9.05618	5.16837	2.69657	1.42058	9.42626	11.2315	13.4802	15.3059	10.8046	7.99032	8.4225	9.66758	14.7607	12.5911	23.0167	19.4885	7.79393	13.3458	7.7333	6.60105	16.8131	19.4544	15.0282	17.2443	11.8813	7.80312	14.796	15.0748
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top