TCONS_00045332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045332
Unique NameTCONS_00045332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length870

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045332 ID=TCONS_00045332|Name=TCONS_00045332|organism=Clytia hemisphaerica|type=transcript|length=870bp
TATCTTTTATCTCAGAATTCAGAAAAGTTTCACCCAAACAGACAATGTCG
AATTTATGAATGTTTAGAAATGCAGAAAGTTGTTTAATGAATCTTAATAA
AATCTCCCATAGAATCTTCAACCCAGACGCTATTCAGGTTCCAATGACAA
ATGCTTAGCGTCGTTTCCCTCTCCGGCCCAGGGTTAACCTCAATATCTCC
GGACAAAATAAGGCATAAAAATATGAGtgtaaaaaggaaattttgtaAGA
TGAAAAAACTACAGGAGGGATTAAGCTTATGATATTTAAGgcgtaaaata
ttgaaaaatccgATGCATGCTTTGTACTGACTAAGACTTACCCCCATGAC
AAACTCCGATCAACGGATTCTCCGATCAACAACCATCAAACAACATGACA
TAAGAAATTTGCTCATAATGCTCTCCNTACTGACTAAGACTTACCCCCAT
GACAAACTCCGATCAACAACCATCAAACAACATGACATAAGAAATTTGCT
CATAATGCTCTCTaagccaaaaaataaaacaaaaaaagaaaaatataatt
ccgaaaaaagttgtaaaaagagaaaagaaatgcTTAATGCATAAAGAATC
ATTTCGTAAAAAGATTCCATCGTGGTTAGTGAGAGGTAATTATAAGTAAT
TACTTAGATGAAAGGGCATCATAAAATGAttgattttcgcaaaaaaagaa
agaaagttgcaaaaaagtttgataaacacaaaaaaactttcagatgtaag
aaaaggaaaaaaaaactacttgttTAAAATATTATGTTTGAAGGACTCGA
TATCATTGAAAAACTTGAATTCTTTAGATTTTAAGCGTGCAACACAGTTG
CAGTTTATGTCTGCAAACAC
Run BLAST on NCBI

transcript from alignment at sc0007528:2..871

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045332 ID=TCONS_00045332|Name=TCONS_00045332|organism=Clytia hemisphaerica|type=transcript|length=870bp|location=Sequence derived from alignment at sc0007528:2..871 (Clytia hemisphaerica)
GTGTTTGCAGACATAAACTGCAACTGTGTTGCACGCTTAAAATCTAAAGA
ATTCAAGTTTTTCAATGATATCGAGTCCTTCAAACATAATATTTTAaaca
agtagtttttttttccttttcttacatctgaaagtttttttgtgtttatc
aaacttttttgcaactttctttctttttttgcgaaaatcaaTCATTTTAT
GATGCCCTTTCATCTAAGTAATTACTTATAATTACCTCTCACTAACCACG
ATGGAATCTTTTTACGAAATGATTCTTTATGCATTAAgcatttcttttct
ctttttacaacttttttcggaattatatttttctttttttgttttatttt
ttggcttAGAGAGCATTATGAGCAAATTTCTTATGTCATGTTGTTTGATG
GTTGTTGATCGGAGTTTGTCATGGGGGTAAGTCTTAGTCAGTANGGAGAG
CATTATGAGCAAATTTCTTATGTCATGTTGTTTGATGGTTGTTGATCGGA
GAATCCGTTGATCGGAGTTTGTCATGGGGGTAAGTCTTAGTCAGTACAAA
GCATGCATcggatttttcaatattttacgcCTTAAATATCATAAGCTTAA
TCCCTCCTGTAGTTTTTTCATCTtacaaaatttcctttttacaCTCATAT
TTTTATGCCTTATTTTGTCCGGAGATATTGAGGTTAACCCTGGGCCGGAG
AGGGAAACGACGCTAAGCATTTGTCATTGGAACCTGAATAGCGTCTGGGT
TGAAGATTCTATGGGAGATTTTATTAAGATTCATTAAACAACTTTCTGCA
TTTCTAAACATTCATAAATTCGACATTGTCTGTTTGGGTGAAACTTTTCT
GAATTCTGAGATAAAAGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028913XLOC_028913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045332-exon-sc0007528-1491911889:2..871TCONS_00045332-exon-sc0007528-1491911889:2..871Clytia hemisphaericaexon
TCONS_00045332-exon-sc0007528-1510915933:2..871TCONS_00045332-exon-sc0007528-1510915933:2..871Clytia hemisphaericaexon
TCONS_00045332-exon-sc0007528-1575043694:2..871TCONS_00045332-exon-sc0007528-1575043694:2..871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007528supercontigsc0007528:2..871 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.502979	0.371182	0.507554	1.24837	1.10956	1.30515	1.92853	2.03602	0.858212	1.48788	0.844872	1.12881	0.680177	1.02613	0.773097	0.577781	0.764247	1.30924	0.1218	0.799838	0.831552	1.97366	0.436319	0.385509	0.960651	0.779436	0.655402	0.734017	0.699905	0.885785
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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