TCONS_00045330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045330
Unique NameTCONS_00045330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length869

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045330 ID=TCONS_00045330|Name=TCONS_00045330|organism=Clytia hemisphaerica|type=transcript|length=869bp
ctttgcgactgtgaaatgaccTATTTGTTCAAAAGATTTACTATATGACG
TTTTGTTTTACGTTTGCTCCCTTTGTTTCACGTTTGCTAGGTTTGTTTCG
TGTTCTGCTTTTTTCTGTGCTTAGATAAGTATtggaaaatagttttttat
agatttttttaaaaatttcaaaacacagcatttttttggtttttttcgct
tttaaataaaaagctttttctgctgtaaaaatattcttctttttttaaag
tattaaactttttgagtttgttATAATTAACATCTGGATGAAAATTGGTT
TGATTATTCTTTGCCAAAAGGTGTCTCTGCAGTCCTTTTCCTCAGACGAT
GGTTATTTCTCttctttcattgttttcaaagCACAGTAATGTCATTTCAA
AGTTCAACAGTTTCGGCAGACACAATTTTTAAGGCAAGAATAACTGTACA
ATTTTCCATGAAGATGCCAATATTCATAATGTTTTCATGACTTACAACCT
TGANAATTTTCCATGAAGATGCCAATATTCATAATGTTTTCATGACTTAC
AACCTTGAGAAATGCTTTTATTTGTGAAGCGCGTGTCTTTAAAATTTACC
TTTTGAAGCTCAAAAGTCTAACTGTAGAGTTTTCGTTTCTTCTTCATATA
AATCAAAAGGAGTATTGGATCCTATCATATCTAGTGTCATAACTCCAAAA
ATCTTCGCTTCCTTGCTTTACGGTGCTCAAAAATTAAAGGATTGTCATGG
ATGCATTAAATATATTTACAAACTCAATACTGGTTACATTATTTTATTTG
ACCCACATTAGGTTGTACAAAAGATTTTTACAGATAGAGCtgaaaaccaa
ttttttatttattctagAA
Run BLAST on NCBI

transcript from alignment at sc0007522:8..876

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045330 ID=TCONS_00045330|Name=TCONS_00045330|organism=Clytia hemisphaerica|type=transcript|length=869bp|location=Sequence derived from alignment at sc0007522:8..876 (Clytia hemisphaerica)
TTctagaataaataaaaaattggttttcaGCTCTATCTGTAAAAATCTTT
TGTACAACCTAATGTGGGTCAAATAAAATAATGTAACCAGTATTGAGTTT
GTAAATATATTTAATGCATCCATGACAATCCTTTAATTTTTGAGCACCGT
AAAGCAAGGAAGCGAAGATTTTTGGAGTTATGACACTAGATATGATAGGA
TCCAATACTCCTTTTGATTTATATGAAGAAGAAACGAAAACTCTACAGTT
AGACTTTTGAGCTTCAAAAGGTAAATTTTAAAGACACGCGCTTCACAAAT
AAAAGCATTTCTCAAGGTTGTAAGTCATGAAAACATTATGAATATTGGCA
TCTTCATGGAAAATTNTCAAGGTTGTAAGTCATGAAAACATTATGAATAT
TGGCATCTTCATGGAAAATTGTACAGTTATTCTTGCCTTAAAAATTGTGT
CTGCCGAAACTGTTGAACTTTGAAATGACATTACTGTGctttgaaaacaa
tgaaagaaGAGAAATAACCATCGTCTGAGGAAAAGGACTGCAGAGACACC
TTTTGGCAAAGAATAATCAAACCAATTTTCATCCAGATGTTAATTATaac
aaactcaaaaagtttaatactttaaaaaaagaagaatatttttacagcag
aaaaagctttttatttaaaagcgaaaaaaaccaaaaaaatgctgtgtttt
gaaatttttaaaaaaatctataaaaaactattttccaATACTTATCTAAG
CACAGAAAAAAGCAGAACACGAAACAAACCTAGCAAACGTGAAACAAAGG
GAGCAAACGTAAAACAAAACGTCATATAGTAAATCTTTTGAACAAATAgg
tcatttcacagtcgcaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028911XLOC_028911Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045330-exon-sc0007522-1491911889:8..876TCONS_00045330-exon-sc0007522-1491911889:8..876Clytia hemisphaericaexon
TCONS_00045330-exon-sc0007522-1510915933:8..876TCONS_00045330-exon-sc0007522-1510915933:8..876Clytia hemisphaericaexon
TCONS_00045330-exon-sc0007522-1575043694:8..876TCONS_00045330-exon-sc0007522-1575043694:8..876Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007522supercontigsc0007522:8..876 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.107508	0.157256	0.304316	0.774087	0.869886	0.343698	1.38219	0.776393	0.362381	0.617192	0.871363	0.1074	0.536253	0.519777	0.610468	0.360319	0.564943	0.289524	0.114284	0.11959	0.779589	1.06472	1.23267	0.840506	0.403994	0.360555	1.47415	0.943953	0.715955	0.486297
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top