TCONS_00045314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045314
Unique NameTCONS_00045314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045314 ID=TCONS_00045314|Name=TCONS_00045314|organism=Clytia hemisphaerica|type=transcript|length=408bp
tttccaaaaaccgACCCCTTTTTACAAAGGAAAAGTGTGTTGAGTGTTTT
TATATAGACTTTTTGATAACGACTAATAACTAATACTAATAACTTTACAG
GTGTAATCAAGTGTGATGTATCTGACCACTTCCCAAACTTTCTCATCCgt
caaaaaaatctataaacTTTCAAAAGTGAAAAGACTTCTTCCAAGCATTT
cattgacaaaaaaacaatcaacaaaTTTTGTGATTCACTTAAAACTATGA
ACTGGGAGCTTGTAACAGAAACCAATTATGCGGAACATTCTTATCatgtt
ttcaaagaaatattcACAAGATGCTAAGACAAAACCTTTCCAAAAACAGA
GATCACGATCAAATATCAAACAAGATATTCAAAGAATGCTTTAAAAATAC
GGGACAGA
Run BLAST on NCBI

transcript from alignment at sc0007480:465..872

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045314 ID=TCONS_00045314|Name=TCONS_00045314|organism=Clytia hemisphaerica|type=transcript|length=408bp|location=Sequence derived from alignment at sc0007480:465..872 (Clytia hemisphaerica)
TCTGTCCCGTATTTTTAAAGCATTCTTTGAATATCTTGTTTGATATTTGA
TCGTGATCTCTGTTTTTGGAAAGGTTTTGTCTTAGCATCTTGTgaatatt
tctttgaaaacatGATAAGAATGTTCCGCATAATTGGTTTCTGTTACAAG
CTCCCAGTTCATAGTTTTAAGTGAATCACAAAAtttgttgattgtttttt
tgtcaatgAAATGCTTGGAAGAAGTCTTTTCACTTTTGAAAgtttataga
tttttttgacGGATGAGAAAGTTTGGGAAGTGGTCAGATACATCACACTT
GATTACACCTGTAAAGTTATTAGTATTAGTTATTAGTCGTTATCAAAAAG
TCTATATAAAAACACTCAACACACTTTTCCTTTGTAAAAAGGGGTcggtt
tttggaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028895XLOC_028895Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045314-exon-sc0007480-1491911889:465..872TCONS_00045314-exon-sc0007480-1491911889:465..872Clytia hemisphaericaexon
TCONS_00045314-exon-sc0007480-1510915933:465..872TCONS_00045314-exon-sc0007480-1510915933:465..872Clytia hemisphaericaexon
TCONS_00045314-exon-sc0007480-1575043694:465..872TCONS_00045314-exon-sc0007480-1575043694:465..872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007480supercontigsc0007480:465..872 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.869256	1.21115	1.18492	0.721262	0.569951	0.916829	0	0.4507	0	0	0.118734	0.118569	0	0.101233	0	0	0.274351	0	0	0.517114	0.50446	0	0	0	0	0.733372	0.521783	0.395754	0.604816
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top