TCONS_00045308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045308
Unique NameTCONS_00045308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045308 ID=TCONS_00045308|Name=TCONS_00045308|organism=Clytia hemisphaerica|type=transcript|length=558bp
GTGAAAGAATCATGCTCGTCTATCACGTGAACACGGCATGTTGAATCATG
ACTGTTCAACCTTCCTCCCTCCTCCAAGCGATCAAGTGACCTTTGCGCTC
AATTTATAAACTCTGGTACAATCTTTCTGAAACTACTAaattttttgtct
ttgttttttgaaCACGAAGAACTCAGAGGCAGAGGagattttataatatt
ttcatcTCAAAGAAATGATAATGGAACGACACAACTTTCGATACAACAGA
TACGATACAGGGCAATACACAAACATGAACACAGTCAAGAGATCAGAAGT
TCCTGACCTTGAAGCAGTCAACTCCCTTCTTTCACTGTGTAAAAGATCGT
TTAAACCTTCAGAGAATGGACGCTCAATCAAGACCAACGTCATCTCATCA
GTTTCAAGATCAACTcttcaatattttgatgaaagttCAAATGGAGAGGC
TCCTGTAAGTTGAAAGTTATTTCTCAAAAGAATTATCAATGCAGTTGAAA
TTCTCACTTGTTTGTGAAATAAGTTGTCATTTCTTCACTTCACTGAAGAA
AATTAAtc
Run BLAST on NCBI

transcript from alignment at sc0007466:103..900-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045308 ID=TCONS_00045308|Name=TCONS_00045308|organism=Clytia hemisphaerica|type=transcript|length=798bp|location=Sequence derived from alignment at sc0007466:103..900- (Clytia hemisphaerica)
GTGAAAGAATCATGCTCGTCTATCACGTGAACACGGCATGTTGAATCATG
ACTGTTCAACCTTCCTCCCTCCTCCAAGCGATCAAGTGACCTTTGCGCTC
AATTTATAAACTCTGGTACAATCTTTCTGAAACTACTAAATTTTTTGTCT
TTGTTTTTTGAACACGAAGAACTCAGAGGCAGAGGAGATTTTATAATATT
TTCATCTCAAAGAAATGATAATGGAACGACACAACTTTCGATACAACAGA
TACGATGTATGTAACATATTTTATTATTTGAAACTCACTCATTTAAATTT
GTTTTAATGAAAATGGACCAGTAAATGCCAGTAAAGGTTTTCAACTGGGT
TTTGTTAAAATATACTTGCAGTTGGGTTGGCAGGATGTATATACAAGACA
ACAATTTAAATTATTTAGTTTTGAAGTTCTTTCCCTAAAATAGGTTGAAG
AATATCATTCTGGTTATTATGATCTTTATATCACTTTATATTACAGACAG
GGCAATACACAAACATGAACACAGTCAAGAGATCAGAAGTTCCTGACCTT
GAAGCAGTCAACTCCCTTCTTTCACTGTGTAAAAGATCGTTTAAACCTTC
AGAGAATGGACGCTCAATCAAGACCAACGTCATCTCATCAGTTTCAAGAT
CAACTCTTCAATATTTTGATGAAAGTTCAAATGGAGAGGCTCCTGTAAGT
TGAAAGTTATTTCTCAAAAGAATTATCAATGCAGTTGAAATTCTCACTTG
TTTGTGAAATAAGTTGTCATTTCTTCACTTCACTGAAGAAAATTAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028889XLOC_028889Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045308-exon-sc0007466-1575043694:645..900TCONS_00045308-exon-sc0007466-1575043694:645..900Clytia hemisphaericaexon
TCONS_00045308-exon-sc0007466-1575043694:103..404TCONS_00045308-exon-sc0007466-1575043694:103..404Clytia hemisphaericaexon
TCONS_00045308-exon-sc0007466-1510915933:645..900TCONS_00045308-exon-sc0007466-1510915933:645..900Clytia hemisphaericaexon
TCONS_00045308-exon-sc0007466-1510915933:103..404TCONS_00045308-exon-sc0007466-1510915933:103..404Clytia hemisphaericaexon
TCONS_00045308-exon-sc0007466-1491911889:645..900TCONS_00045308-exon-sc0007466-1491911889:645..900Clytia hemisphaericaexon
TCONS_00045308-exon-sc0007466-1491911889:103..404TCONS_00045308-exon-sc0007466-1491911889:103..404Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007466supercontigsc0007466:103..900 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42318	2.67651	0.805696	0.900855	54.6981	56.2226	46.7885	57.6288	39.3193	168.499	42.9471	40.1473	54.8299	36.0887	38.6169	66.3441	20.2991	22.4485	26.0429	34.9414	41.6734	32.3599	9.5576	14.5174	26.74	21.3322	126.427	74.9753	24.0327	23.4509
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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