TCONS_00045302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045302
Unique NameTCONS_00045302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045302 ID=TCONS_00045302|Name=TCONS_00045302|organism=Clytia hemisphaerica|type=transcript|length=267bp
TTTGTGGAAATTCAcgcatttttcttttcaaggCTTCGGCAGTGGTTTCG
GTAATACAGGGACATCAACATCTGGAGGCCTTTTTGGTGGAAACAACAGC
AGTCTCTTTCAAACCCCAAAAACAAACAATGTATTTGGACAAACACAACA
AAAATCTGGATTTGGTGgctttggtaCATCATCAAGTGGAAATGCGTTTG
GTACAACATCAGCATTTGGCACTACAAGTACAAGTACCACTGGTGGCAGT
CTTTTTGGTGGCGGTGG
Run BLAST on NCBI

transcript from alignment at sc0007458:455..913+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045302 ID=TCONS_00045302|Name=TCONS_00045302|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at sc0007458:455..913+ (Clytia hemisphaerica)
TTTGTGGAAATTCAcgcatttttcttttcaaggCTTCGGCAGTGGTTTCG
GTAATACAGGGACATCAACATCTGGAGGCCTTTTTGGTGGAAACAACAGC
AGTCTCTTTCAAACCCCAAAAACAAACAATGTATTTGGACAAACACAACA
AAAATCTGGATTTGGTGGTAAGAGTTCATTTACCTAGTTGAGTTCATGAA
ATATAAATACCAAGTCTTTTTACTAATCCTTTGTATAGTTAAGATAATCT
TTGGCATTTTGATAAGGAATATtatgaagaaaatttaaaataaaacttgt
AATGGAGGCAGTattaaaaaagtttgaattgGGTCATGAAATTATAActc
atttttaaggctttggtaCATCATCAAGTGGAAATGCGTTTGGTACAACA
TCAGCATTTGGCACTACAAGTACAAGTACCACTGGTGGCAGTCTTTTTGG
TGGCGGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028883XLOC_028883Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045302-exon-sc0007458-1491911889:455..621TCONS_00045302-exon-sc0007458-1491911889:455..621Clytia hemisphaericaexon
TCONS_00045302-exon-sc0007458-1510915933:455..621TCONS_00045302-exon-sc0007458-1510915933:455..621Clytia hemisphaericaexon
TCONS_00045302-exon-sc0007458-1575043694:455..621TCONS_00045302-exon-sc0007458-1575043694:455..621Clytia hemisphaericaexon
TCONS_00045302-exon-sc0007458-1491911889:814..913TCONS_00045302-exon-sc0007458-1491911889:814..913Clytia hemisphaericaexon
TCONS_00045302-exon-sc0007458-1510915933:814..913TCONS_00045302-exon-sc0007458-1510915933:814..913Clytia hemisphaericaexon
TCONS_00045302-exon-sc0007458-1575043694:814..913TCONS_00045302-exon-sc0007458-1575043694:814..913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007458supercontigsc0007458:455..913 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.5425	24.2333	60.9639	61.6099	113.304	75.6629	49.4456	54.1241	16.9524	41.9965	26.376	19.7029	22.0365	21.2505	25.1983	26.3205	31.0922	45.9816	8.8056	8.55625	18.8784	20.9278	12.2114	16.6529	82.5842	87.3114	8.11314	5.19514	18.3882	26.0947
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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