TCONS_00045295 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045295
Unique NameTCONS_00045295
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length661

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045295 ID=TCONS_00045295|Name=TCONS_00045295|organism=Clytia hemisphaerica|type=transcript|length=661bp
CTAAATCATCCTTTACATATTCTTTCTCGCGCCAGTATCGCGCCACGTAC
ATATGACCAAACGTTACCTGAAACAAAAGGGACTACTCGCCATACCATTT
GACAAAGGCATTGGCATATGTATAATGACTGTTGAatgttataaatctaa
aattatgaatattATCAACTTGCCACAATTTGAGAAATACATACCAGACA
GAAAGAATGCACGTCATCCCTTATTGAAAGAGGAAGACAAAGTGATTGAA
CTGTTGAAAAAGCTTAAAGATGAAAATAGGATATCTGATGAACTATACAA
AAAGTTACGACCAACTGGAAGTCAACCTGCACGTCTATATGGTTTAACGA
AAATACATAAACCAAACATTCCAATCCGCCCTGTGGTATCTATGCCTGGT
TCAGCTTACCACAAGATAGCCAAAAAGGTTTCTAAATGGTTATCTGTGGT
TGAAGAATGTAATATCAACACATCCACGAAATCGATAGTTGAAAAGATTG
CAGATATTGAGCTACCTGAAGGACATGAACTTGTAAGTTTTGATGTTTGT
TCATTATACACTAACGTCCGGCTGTACAGGAAGCGATAACGGTATGCACC
AATCTCCTTTATTCAGGAGATTACCCTAAACCACCTGTTAGCAAAGAAAC
TTTCACTGAAC
Run BLAST on NCBI

protein sequence of TCONS_00045295-protein

>TCONS_00045295-protein ID=TCONS_00045295-protein|Name=TCONS_00045295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MTKRYLKQKGLLAIPFDKGIGICIMTVECYKSKIMNIINLPQFEKYIPDR
KNARHPLLKEEDKVIELLKKLKDENRISDELYKKLRPTGSQPARLYGLTK
IHKPNIPIRPVVSMPGSAYHKIAKKVSKWLSVVEECNINTSTKSIVEKIA
DIELPEGHELVSFDVCSLYTNVRLYRKR
Run BLAST on NCBI

transcript from alignment at sc0007439:2..662

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045295 ID=TCONS_00045295|Name=TCONS_00045295|organism=Clytia hemisphaerica|type=transcript|length=661bp|location=Sequence derived from alignment at sc0007439:2..662 (Clytia hemisphaerica)
GTTCAGTGAAAGTTTCTTTGCTAACAGGTGGTTTAGGGTAATCTCCTGAA
TAAAGGAGATTGGTGCATACCGTTATCGCTTCCTGTACAGCCGGACGTTA
GTGTATAATGAACAAACATCAAAACTTACAAGTTCATGTCCTTCAGGTAG
CTCAATATCTGCAATCTTTTCAACTATCGATTTCGTGGATGTGTTGATAT
TACATTCTTCAACCACAGATAACCATTTAGAAACCTTTTTGGCTATCTTG
TGGTAAGCTGAACCAGGCATAGATACCACAGGGCGGATTGGAATGTTTGG
TTTATGTATTTTCGTTAAACCATATAGACGTGCAGGTTGACTTCCAGTTG
GTCGTAACTTTTTGTATAGTTCATCAGATATCCTATTTTCATCTTTAAGC
TTTTTCAACAGTTCAATCACTTTGTCTTCCTCTTTCAATAAGGGATGACG
TGCATTCTTTCTGTCTGGTATGTATTTCTCAAATTGTGGCAAGTTGATaa
tattcataattttagatttataacatTCAACAGTCATTATACATATGCCA
ATGCCTTTGTCAAATGGTATGGCGAGTAGTCCCTTTTGTTTCAGGTAACG
TTTGGTCATATGTACGTGGCGCGATACTGGCGCGAGAAAGAATATGTAAA
GGATGATTTAG

Coding sequence (CDS) from alignment at sc0007439:2..662

>TCONS_00045295 ID=TCONS_00045295|Name=TCONS_00045295|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at sc0007439:2..662 (Clytia hemisphaerica)
TTATCGCTTCCTGTACAGCCGGACGTTAGTGTATAATGAACAAACATCAA
AACTTACAAGTTCATGTCCTTCAGGTAGCTCAATATCTGCAATCTTTTCA
ACTATCGATTTCGTGGATGTGTTGATATTACATTCTTCAACCACAGATAA
CCATTTAGAAACCTTTTTGGCTATCTTGTGGTAAGCTGAACCAGGCATAG
ATACCACAGGGCGGATTGGAATGTTTGGTTTATGTATTTTCGTTAAACCA
TATAGACGTGCAGGTTGACTTCCAGTTGGTCGTAACTTTTTGTATAGTTC
ATCAGATATCCTATTTTCATCTTTAAGCTTTTTCAACAGTTCAATCACTT
TGTCTTCCTCTTTCAATAAGGGATGACGTGCATTCTTTCTGTCTGGTATG
TATTTCTCAAATTGTGGCAAGTTGATaatattcataattttagatttata
acatTCAACAGTCATTATACATATGCCAATGCCTTTGTCAAATGGTATGG
CGAGTAGTCCCTTTTGTTTCAGGTAACGTTTGGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028876XLOC_028876Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045295-proteinTCONS_00045295-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045295-exon-sc0007439-1491911889:2..662TCONS_00045295-exon-sc0007439-1491911889:2..662Clytia hemisphaericaexon
TCONS_00045295-exon-sc0007439-1510915933:2..662TCONS_00045295-exon-sc0007439-1510915933:2..662Clytia hemisphaericaexon
TCONS_00045295-exon-sc0007439-1575043694:2..662TCONS_00045295-exon-sc0007439-1575043694:2..662Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007439supercontigsc0007439:2..662 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.153081	0.0888711	0.0869465	0.95264	0.752789	1.11003	0.850254	0.52914	0.409641	0.397607	0.784114	0.417613	0.975814	0	0	0	0.0603937	0.750935	0	0.0758891	0.111048	0	0	0.674175	1.72984	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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