TCONS_00045294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045294
Unique NameTCONS_00045294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045294 ID=TCONS_00045294|Name=TCONS_00045294|organism=Clytia hemisphaerica|type=transcript|length=501bp
attttgaatctgtctcaaaccagcaaaaacatgctcatttttaagtataa
ccatctttctttcaaaataaacaaaaatctacaagtcagaatcttcattt
taatgacgacctccgttttgggggccgtctccgttttgggggccatatac
tgtagtacATTTTGTTTCAGtctaaaaatgctaattaggATGTTATTATG
AAAAACTCCttatttttggttgtttttttgttttgtgataGTCAATATGA
TAAGAATGATATTAATAAATTTATAATAGAAGATAAGAGCTGCAAGGAAA
AAACATGGAGCCAGCGACAAGGCTTTTTTGGTTGAGCTTCTCGATGCTGA
TTGGTTGTTATATATTTGGAAGCATACCGCTCACATTGTCTTTCACTGAG
AGAAATATGAGAAGTGTATCAATTGGAGGTGCAGGACTAATTGTTGGAAC
AGCCTTATCAGTCATTATTCCAGAGGGTGTTCACGCTATGTATGATTCAG
G
Run BLAST on NCBI

transcript from alignment at sc0007437:4..918-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045294 ID=TCONS_00045294|Name=TCONS_00045294|organism=Clytia hemisphaerica|type=transcript|length=915bp|location=Sequence derived from alignment at sc0007437:4..918- (Clytia hemisphaerica)
ATTTTGAATCTGTCTCAAACCAGCAAAAACATGCTCATTTTTAAGTATAA
CCATCTTTCTTTCAAAATAAACAAAAATCTACAAGTCAGAATCTTCATTT
TAATGACGACCTCCGTTTTGGGGGCCGTCTCCGTTTTGGGGGCCATATAC
TGTAGTACATTTTGTTTCAGTCTAAAAATGCTAATTAGGATGTTATTATG
AAAAACTCCTTATTTTTGGTTGTTTTTTTGTTTTGTGATAGTCAATATGA
TAAGAATGATATTAATAAATTTATAATAGAAGATAAGAGCTGCAAGGAAA
AAACATGGAGCCAGCGACAAGGCTTTTTTGGTTGAGCTTCTCGATGCTGA
TTGGTTGTTATATATTTGGAAGCATACCGCTCACATTGTCTTTCACTGAG
GTTAGAGAGTCTTGATTTTAATATCTTTTATAAGTATTTTTAACATTGAA
CTATACCTCAAACCTTGTGGACTAAGTTCCTTCAACTATCTTTAATCCAA
TTTTCAAAAATGATAACCAGTTCCACTCCCAGCACTTATTAATGCACCCC
TGCCCTGCTTTCATACTGTAGTATAACCTTCTACTCCTTTAAAATGAGGG
GTCAATGGCAACTCTTGTATGGTCTCATTTTCCTAATAATCTAAGAAATC
CATCTCCTGTTGGATCTATCTACAATTCCAGATGCAACTAGTATCCTATT
TATCCTTTAAAGATTCCAAAATAAATATAGTTATTTTGCCAATAAATTGT
TATTTGGTTACTGTTGAATGATTATGTACCAACGCTTTATTTTTTTTCTT
ATATTCTTTTTCAGAGAAATATGAGAAGTGTATCAATTGGAGGTGCAGGA
CTAATTGTTGGAACAGCCTTATCAGTCATTATTCCAGAGGGTGTTCACGC
TATGTATGATTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028875XLOC_028875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045294-exon-sc0007437-1575043694:519..918TCONS_00045294-exon-sc0007437-1575043694:519..918Clytia hemisphaericaexon
TCONS_00045294-exon-sc0007437-1575043694:4..104TCONS_00045294-exon-sc0007437-1575043694:4..104Clytia hemisphaericaexon
TCONS_00045294-exon-sc0007437-1510915933:519..918TCONS_00045294-exon-sc0007437-1510915933:519..918Clytia hemisphaericaexon
TCONS_00045294-exon-sc0007437-1510915933:4..104TCONS_00045294-exon-sc0007437-1510915933:4..104Clytia hemisphaericaexon
TCONS_00045294-exon-sc0007437-1491911889:519..918TCONS_00045294-exon-sc0007437-1491911889:519..918Clytia hemisphaericaexon
TCONS_00045294-exon-sc0007437-1491911889:4..104TCONS_00045294-exon-sc0007437-1491911889:4..104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007437supercontigsc0007437:4..918 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.6785	5.91797	4.32798	4.06568	11.1324	11.1926	11.975	15.0393	5.30907	7.72165	7.092	5.81147	4.87908	5.94145	6.64135	5.49579	8.98633	7.8987	4.85083	5.00026	6.40953	6.62297	10.2985	12.2037	6.53124	5.83923	4.00291	4.78484	7.63118	7.01424
Blast
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BLAST of TCONS_00045294 vs. Swiss-Prot (Human)
Match: S39A9 (Zinc transporter ZIP9 OS=Homo sapiens GN=SLC39A9 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.664e-16
Identity = 32/65 (49.23%), Postives = 49/65 (75.38%), Query Frame = 2 
Query:  305 MEPATRLFWLSFSMLIGCYIFGSIPLTLSFTERNMRSVSIGGAGLIVGTALSVIIPEGVHAMYDS 499
            M+    +  LS +ML+GCY+ G IPL ++F+E  ++ V++ GAGL+ GTAL+VI+PEGVHA+Y+ 
Sbjct:    1 MDDFISISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVHALYED 65
The following BLAST results are available for this feature:
BLAST of TCONS_00045294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S39A92.664e-1649.23Zinc transporter ZIP9 OS=Homo sapiens GN=SLC39A9 P... [more]
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