TCONS_00045292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045292
Unique NameTCONS_00045292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045292 ID=TCONS_00045292|Name=TCONS_00045292|organism=Clytia hemisphaerica|type=transcript|length=230bp
GAAGACTAGTGAACGACTCTAAAGATTTCCCCAACGCAAAAATGAGGATT
TTCGAGATGGAAAATAAACCGCCCCGCCTTTGCCTTTTTGCCACAAAAAC
CATAGAAGTGTATGacgaaattcaatatttttatggaaaatttgATCAGC
CCTGGTATCATACTCAGgAAATGCAGCAAATTGAGGTTGAACATAATGGT
GAAAATTTCCCACAAATGACGAAAAAGGTA
Run BLAST on NCBI

transcript from alignment at sc0007428:1..610+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045292 ID=TCONS_00045292|Name=TCONS_00045292|organism=Clytia hemisphaerica|type=transcript|length=610bp|location=Sequence derived from alignment at sc0007428:1..610+ (Clytia hemisphaerica)
GAAGACTAGTGAACGACTCTAAAGATTTCCCCAACGCAAAAATGAGGATT
TTCGAGATGGAAAATAAACCGCCCCGCCTTTGCCTTTTTGCCACAAAAAC
CATAGAAGTGTATGacgaaattcaatatttttatggaaaatttgATCAGC
CCTGGTATCATACTCAGGTAAGAACTAGGTACCAATAAGGCCCTAAGCAA
AGGGGGTTGGTGCATCATATAACCCCCTGTCTATTAGGTACCAGAGAGCA
GAGACTCGAGCAGTGTTCAAAGTTCTTATGTGTCAGGGATTTAAAATCTC
TGATCATCTCTTGAACAGTAACAGGTGTGATTATAACAGCATCAATCCTA
TCAGTTGAGGTACTgactaaaattttgattatttccaAACAAGCATTAAG
TTTTGGGATTTTTCTAACCCTCCTACATATTCTAAACCCCCTGTCTATTA
GGTATTGGAGAACAGTCTCGAACAGTGTTCAAAGTTCTTATGTCTCAGAG
GGATTTCCATCTCTTAGATTATCTCcttgagtttttttttattgtaggAA
ATGCAGCAAATTGAGGTTGAACATAATGGTGAAAATTTCCCACAAATGAC
GAAAAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028873XLOC_028873Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045292-exon-sc0007428-1491911889:1..167TCONS_00045292-exon-sc0007428-1491911889:1..167Clytia hemisphaericaexon
TCONS_00045292-exon-sc0007428-1510915933:1..167TCONS_00045292-exon-sc0007428-1510915933:1..167Clytia hemisphaericaexon
TCONS_00045292-exon-sc0007428-1575043694:1..167TCONS_00045292-exon-sc0007428-1575043694:1..167Clytia hemisphaericaexon
TCONS_00045292-exon-sc0007428-1491911889:548..610TCONS_00045292-exon-sc0007428-1491911889:548..610Clytia hemisphaericaexon
TCONS_00045292-exon-sc0007428-1510915933:548..610TCONS_00045292-exon-sc0007428-1510915933:548..610Clytia hemisphaericaexon
TCONS_00045292-exon-sc0007428-1575043694:548..610TCONS_00045292-exon-sc0007428-1575043694:548..610Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007428supercontigsc0007428:1..610 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.03002	2.30336	0	5.6977	8.88353	6.78994	8.89933	2.1818	5.25488	17.1221	3.37985	1.34261	1.7766	1.19956	3.54419	0.79293	4.54977	3.36848	1.17496	0	1.49439	3.63326	2.20211	10.2065	18.2182	2.89668	3.09142	1.17237	1.19446
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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