TCONS_00045285 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045285
Unique NameTCONS_00045285
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045285 ID=TCONS_00045285|Name=TCONS_00045285|organism=Clytia hemisphaerica|type=transcript|length=394bp
CATGGTCACTGTAGATAGTGTTcggtttctttttatatatacagTTCAAC
GTTTCTTTATATACAGTTCAATGGCTCTTTCCCCTATCGGCAGGGAGCAA
GTGGTTGTTGTTCCAAGAGGCCAGGCGTGTTATGAGATGCTAATCGTTGT
AGGATATTTGATGACGCTCTGGTAACTATTGCTTGTGTTGGCTGTGCTGG
CTGAGGCTGAGCGGGCATATGAACTTTTGGATGAGGAATAGTTGGAGGAG
TGGTCTCTAGTGGTGAGGCTGGAAGCAGATTAGTGGGTGTGGGTAGTGCT
GTTGGTGATACAAATGTTGCTAGTCGAAGGAAGCGACGATTTTGCAGTGT
CACCCTCCCTGAGCCATTGGTTCTGACTCTGTATTGTCTGTTAG
Run BLAST on NCBI

protein sequence of TCONS_00045285-protein

>TCONS_00045285-protein ID=TCONS_00045285-protein|Name=TCONS_00045285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
NRQYRVRTNGSGRVTLQNRRFLRLATFVSPTALPTPTNLLPASPLETTPP
TIPHPKVHMPAQPQPAQPTQAIVTRASSNILQRLASHNTPGLLEQQPLAP
CR
Run BLAST on NCBI

transcript from alignment at sc0007411:4..397

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045285 ID=TCONS_00045285|Name=TCONS_00045285|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at sc0007411:4..397 (Clytia hemisphaerica)
CTAACAGACAATACAGAGTCAGAACCAATGGCTCAGGGAGGGTGACACTG
CAAAATCGTCGCTTCCTTCGACTAGCAACATTTGTATCACCAACAGCACT
ACCCACACCCACTAATCTGCTTCCAGCCTCACCACTAGAGACCACTCCTC
CAACTATTCCTCATCCAAAAGTTCATATGCCCGCTCAGCCTCAGCCAGCA
CAGCCAACACAAGCAATAGTTACCAGAGCGTCATCAAATATCCTACAACG
ATTAGCATCTCATAACACGCCTGGCCTCTTGGAACAACAACCACTTGCTC
CCTGCCGATAGGGGAAAGAGCCATTGAACTGTATATAAAGAAACGTTGAA
ctgtatatataaaaagaaaccgAACACTATCTACAGTGACCATG

Coding sequence (CDS) from alignment at sc0007411:4..397

>TCONS_00045285 ID=TCONS_00045285|Name=TCONS_00045285|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0007411:4..397 (Clytia hemisphaerica)
AACAGACAATACAGAGTCAGAACCAATGGCTCAGGGAGGGTGACACTGCA
AAATCGTCGCTTCCTTCGACTAGCAACATTTGTATCACCAACAGCACTAC
CCACACCCACTAATCTGCTTCCAGCCTCACCACTAGAGACCACTCCTCCA
ACTATTCCTCATCCAAAAGTTCATATGCCCGCTCAGCCTCAGCCAGCACA
GCCAACACAAGCAATAGTTACCAGAGCGTCATCAAATATCCTACAACGAT
TAGCATCTCATAACACGCCTGGCCTCTTGGAACAACAACCACTTGCTCCC
TGCCGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028866XLOC_028866Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045285-proteinTCONS_00045285-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045285-exon-sc0007411-1491911889:4..397TCONS_00045285-exon-sc0007411-1491911889:4..397Clytia hemisphaericaexon
TCONS_00045285-exon-sc0007411-1510915933:4..397TCONS_00045285-exon-sc0007411-1510915933:4..397Clytia hemisphaericaexon
TCONS_00045285-exon-sc0007411-1575043694:4..397TCONS_00045285-exon-sc0007411-1575043694:4..397Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007411supercontigsc0007411:4..397 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.401012	1.06212	1.47502	2.11224	0.529397	0.281207	0.750461	2.21818	0	0	0	0	0	0.180321	0.108894	0.284371	0	0.413114	0.476601	0.213322	0.741663	0	0	0.199904	0.213775	0	0	0.367231	0.0219302	0.302853
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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