TCONS_00045240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045240
Unique NameTCONS_00045240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045240 ID=TCONS_00045240|Name=TCONS_00045240|organism=Clytia hemisphaerica|type=transcript|length=863bp
gttggaataagaataacctggtgttttcaacgacgggaacaaaaacatca
actttgaacttaatccaagatcttggatgatcgtcatggttacttttctc
tgcgttgattgcgcgctgaatagaaaaTCTGGATTGGTCAGCACAGGTCG
ATTTATGATTTCGGCATgcgtgcttttcacggtaagtCATGTTCCCTTTG
AAgttgtgttttgatgaaaagGCCCTCTCAATGAGGGGGAACTCgtctgg
aatacacggggacgaagTTGTCATGCTGGCACAATCTTTAGGCTATATAT
TAAACTATagatttgatttcaattttatattcaaaactttcttttagcTA
TCAAGATAGAAAGTAATGTTGgtcaatttcttcaaaatgagGCGCTATCG
TCTGCTGATGGTCATTTCCTTAGTATCCTTCAGTTTGGTTTGGTTCTTGC
TTATCGAAAATAAGACAACAAATCCGATCAACACCCAAAGTAATTTTACA
GACCCGATTATCATAAAAAGTGTAATAAACAGAAAACCAACAACAAAAGA
GAAACAGACAAGTAGAAAAGTTACAGAAAAAGTTATTCCCGAATTTCACG
AGTTACcgcaaaaatgcaaaatacCTGTCCTGGATCCTGATCATCCTGAT
GTTAAACCTTTCATTAAAACCATGAACGCCCGCGCGTGTGATTATCCGAA
GCTGACGGAAGTGACGGATGATGGTGTTCTTCAGGTAATAGTGGAGAACA
AATGCCACAGACTGTGATCTCGtctgtattttgatttgttgaaagAACTG
TTTTCTTTTTCGTGGTGAAGTTAGGATTTGAAAGTAATAATACGAATTTT
GGAAATAGTCCTT
Run BLAST on NCBI

protein sequence of TCONS_00045240-protein

>TCONS_00045240-protein ID=TCONS_00045240-protein|Name=TCONS_00045240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MLVNFFKMRRYRLLMVISLVSFSLVWFLLIENKTTNPINTQSNFTDPIII
KSVINRKPTTKEKQTSRKVTEKVIPEFHELPQKCKIPVLDPDHPDVKPFI
KTMNARACDYPKLTEVTDDGVLQVIVENKCHRL
Run BLAST on NCBI

transcript from alignment at sc0007279:159..1021

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045240 ID=TCONS_00045240|Name=TCONS_00045240|organism=Clytia hemisphaerica|type=transcript|length=863bp|location=Sequence derived from alignment at sc0007279:159..1021 (Clytia hemisphaerica)
AAGGACTATTTCCAAAATTCGTATTATTACTTTCAAATCCTAACTTCACC
ACGAAAAAGAAAACAGTTctttcaacaaatcaaaatacagaCGAGATCAC
AGTCTGTGGCATTTGTTCTCCACTATTACCTGAAGAACACCATCATCCGT
CACTTCCGTCAGCTTCGGATAATCACACGCGCGGGCGTTCATGGTTTTAA
TGAAAGGTTTAACATCAGGATGATCAGGATCCAGGACAGgtattttgcat
ttttgcgGTAACTCGTGAAATTCGGGAATAACTTTTTCTGTAACTTTTCT
ACTTGTCTGTTTCTCTTTTGTTGTTGGTTTTCTGTTTATTACACTTTTTA
TGATAATCGGGTCTGTAAAATTACTTTGGGTGTTGATCGGATTTGTTGTC
TTATTTTCGATAAGCAAGAACCAAACCAAACTGAAGGATACTAAGGAAAT
GACCATCAGCAGACGATAGCGCctcattttgaagaaattgacCAACATTA
CTTTCTATCTTGATAgctaaaagaaagttttgaatataaaattgaaatca
aatctATAGTTTAATATATAGCCTAAAGATTGTGCCAGCATGACAActtc
gtccccgtgtattccagacGAGTTCCCCCTCATTGAGAGGGCcttttcat
caaaacacaacTTCAAAGGGAACATGacttaccgtgaaaagcacgcATGC
CGAAATCATAAATCGACCTGTGCTGACCAATCCAGAttttctattcagcg
cgcaatcaacgcagagaaaagtaaccatgacgatcatccaagatcttgga
ttaagttcaaagttgatgtttttgttcccgtcgttgaaaacaccaggtta
ttcttattccaac

Coding sequence (CDS) from alignment at sc0007279:159..1021

>TCONS_00045240 ID=TCONS_00045240|Name=TCONS_00045240|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0007279:159..1021 (Clytia hemisphaerica)
TCACAGTCTGTGGCATTTGTTCTCCACTATTACCTGAAGAACACCATCAT
CCGTCACTTCCGTCAGCTTCGGATAATCACACGCGCGGGCGTTCATGGTT
TTAATGAAAGGTTTAACATCAGGATGATCAGGATCCAGGACAGgtatttt
gcatttttgcgGTAACTCGTGAAATTCGGGAATAACTTTTTCTGTAACTT
TTCTACTTGTCTGTTTCTCTTTTGTTGTTGGTTTTCTGTTTATTACACTT
TTTATGATAATCGGGTCTGTAAAATTACTTTGGGTGTTGATCGGATTTGT
TGTCTTATTTTCGATAAGCAAGAACCAAACCAAACTGAAGGATACTAAGG
AAATGACCATCAGCAGACGATAGCGCctcattttgaagaaattgacCAAC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028822XLOC_028822Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045240-proteinTCONS_00045240-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045240-exon-sc0007279-1491911889:159..1021TCONS_00045240-exon-sc0007279-1491911889:159..1021Clytia hemisphaericaexon
TCONS_00045240-exon-sc0007279-1510915933:159..1021TCONS_00045240-exon-sc0007279-1510915933:159..1021Clytia hemisphaericaexon
TCONS_00045240-exon-sc0007279-1575043694:159..1021TCONS_00045240-exon-sc0007279-1575043694:159..1021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007279supercontigsc0007279:159..1021 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0542473	0	0.070405	0	0.617572	0.578085	1.67384	1.56703	2.01138	1.35896	2.08847	1.18575	0.488373	0.193644	0.124468	0.211161	0.258525	0.2087	0.363679	1.04741	0.224088	0.383745	0.124398	0	0.125679	0.181971	0	0	0	0.184034
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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