TCONS_00045239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045239
Unique NameTCONS_00045239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045239 ID=TCONS_00045239|Name=TCONS_00045239|organism=Clytia hemisphaerica|type=transcript|length=250bp
GAATGCATCACTACATTCTGGAAGCCTGTTTACATTTAATGTTGAAGGAA
ATGCACTGTGACTTTACagatttaactgaaatatttctGGCTACAAAATT
AATTGAATATTTTAACaatgttaaagaaaaattgcaagcTTCTGAAATCA
ACAATCTGGAGGACTTAACTTTTGATACTGTGAAAAACTGGATTAAATGG
AGGCAACGCAAAAGCACAATTTTACAACAGATACCCGCATCTAATCTCTC
Run BLAST on NCBI

transcript from alignment at sc0007277:784..1033

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045239 ID=TCONS_00045239|Name=TCONS_00045239|organism=Clytia hemisphaerica|type=transcript|length=250bp|location=Sequence derived from alignment at sc0007277:784..1033 (Clytia hemisphaerica)
GAGAGATTAGATGCGGGTATCTGTTGTAAAATTGTGCTTTTGCGTTGCCT CCATTTAATCCAGTTTTTCACAGTATCAAAAGTTAAGTCCTCCAGATTGT TGATTTCAGAAgcttgcaatttttctttaacattGTTAAAATATTCAATT AATTTTGTAGCCagaaatatttcagttaaatctGTAAAGTCACAGTGCAT TTCCTTCAACATTAAATGTAAACAGGCTTCCAGAATGTAGTGATGCATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028821XLOC_028821Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045239-exon-sc0007277-1491911889:784..1033TCONS_00045239-exon-sc0007277-1491911889:784..1033Clytia hemisphaericaexon
TCONS_00045239-exon-sc0007277-1510915933:784..1033TCONS_00045239-exon-sc0007277-1510915933:784..1033Clytia hemisphaericaexon
TCONS_00045239-exon-sc0007277-1575043694:784..1033TCONS_00045239-exon-sc0007277-1575043694:784..1033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007277supercontigsc0007277:784..1033 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53323 2.99028 1.736 0.849203 19.6426 9.80329 20.6977 14.7634 1.93803 1.32345 0.912511 2.04224 3.56896 0 3.04716 2.50047 2.30198 1.76959 0 0.852764 6.67086 2.16921 2.63696 2.39738 3.29232 11.7533 1.05118 0 0 1.73383
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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