TCONS_00045238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045238
Unique NameTCONS_00045238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045238 ID=TCONS_00045238|Name=TCONS_00045238|organism=Clytia hemisphaerica|type=transcript|length=339bp
AGATTGCTTCTGGTTGATGGATAAATTTTTGAACTACACCTTGGACTTTA
GCGATGCTCCTTTCAAAGGCACGCAAGAACACTTTTACAGCGACGAATCA
GACTTGCCAACTCGACTTGAAGgtAACAAGCTTCATGATTACTCGAAAGT
GATCGAACTTGGCAAGAATGGCGTCAAATATCGAGATCTACCATCTTGTC
CTTCATTGAAATGGTCCAAACCATTCATAAGACAGGGCGAAGTACCGAAA
GACCTTTTTCCTGGGGCTCCCCCCGTACCGTAAgttgtttttaagatttg
atTGCATTTTAGTGGGTTTTGAATGACATTAAATTTAGG
Run BLAST on NCBI

transcript from alignment at sc0007275:116..1018-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045238 ID=TCONS_00045238|Name=TCONS_00045238|organism=Clytia hemisphaerica|type=transcript|length=903bp|location=Sequence derived from alignment at sc0007275:116..1018- (Clytia hemisphaerica)
AGATTGCTTCTGGTTGATGGATAAATTTTTGAACTACACCTTGGACTTTA
GCGATGCTCCTTTCAAAGGCACGCAAGAACACTTTTACAGCGACGAATCA
GACTTGCCAACTCGACTTGAAGGTATGTACACTTCCCATTAGTATTTACT
CTCGGGTACCTAATAGCCGGGAGGTTTGGAATAAGCGGGGGGTTTGGAAA
AAATCTCAATATTTAATAAGCGGGGGGTTGGAATAAAAATATCCTAGGTA
GAAAATGTTGATTTAAAGTTCGGGCGAGAATCGCTATTTCAGCACTTCCA
CTTTTTTTCATCGAGTATTTCGATTTTGGAGGGGTTCGGTGGTTTTTAGC
CTATATTCCAAGCCTTATTGGAGCAAATTTGAGCTTTTAAATCCTAAGAT
CTTACTAGTAAGTCATGTTAAAACTCCACCTTCTAACTTTAGTTCAACGC
ACTTCAAAATCACTTGTGGTGTTCTGTGAAAAATATTGACGTATTTTTAC
CATTTTCAACAAGCTTTTACAGACTTAATTTTAAGCGAATGTGAACAAAA
GTGATTCGTGTATTTTGGAAGGAAATCATGCTCTGTTTTTAGTTGTTTGA
CAACCATAAGCTTGAGATTGTTGGTTCAAACCTGCATACACCATTTTTAC
AATTTCTTACTCGATTATAATTTCTATTTTTTTCAGGTAACAAGCTTCAT
GATTACTCGAAAGTGATCGAACTTGGCAAGAATGGCGTCAAATATCGAGA
TCTACCATCTTGTCCTTCATTGAAATGGTCCAAACCATTCATAAGACAGG
GCGAAGTACCGAAAGACCTTTTTCCTGGGGCTCCCCCCGTACCGTAAGTT
GTTTTTAAGATTTGATTGCATTTTAGTGGGTTTTGAATGACATTAAATTT
AGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028820XLOC_028820Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045238-exon-sc0007275-1575043694:897..1018TCONS_00045238-exon-sc0007275-1575043694:897..1018Clytia hemisphaericaexon
TCONS_00045238-exon-sc0007275-1575043694:116..332TCONS_00045238-exon-sc0007275-1575043694:116..332Clytia hemisphaericaexon
TCONS_00045238-exon-sc0007275-1510915933:897..1018TCONS_00045238-exon-sc0007275-1510915933:897..1018Clytia hemisphaericaexon
TCONS_00045238-exon-sc0007275-1510915933:116..332TCONS_00045238-exon-sc0007275-1510915933:116..332Clytia hemisphaericaexon
TCONS_00045238-exon-sc0007275-1491911889:897..1018TCONS_00045238-exon-sc0007275-1491911889:897..1018Clytia hemisphaericaexon
TCONS_00045238-exon-sc0007275-1491911889:116..332TCONS_00045238-exon-sc0007275-1491911889:116..332Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007275supercontigsc0007275:116..1018 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.54774	5.05635	1.23598	0.604607	26.8659	22.393	29.1214	18.3944	22.3071	25.9219	24.8839	28.3533	25.5914	23.9381	17.5109	20.9538	21.9208	18.2685	16.2457	25.8036	18.9978	16.6024	7.19683	9.10326	20.2173	24.5809	8.60671	6.78914	9.38995	11.4185
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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