TCONS_00045235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045235
Unique NameTCONS_00045235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045235 ID=TCONS_00045235|Name=TCONS_00045235|organism=Clytia hemisphaerica|type=transcript|length=711bp
AGTCCATTATTTATTAGTATGCTTATCGAGAAAATGTACTCAATTTTATG
TAACTGAAATGACAGAGGACACCACACCTCAAATTATGTATTTTATTTCA
TTCCAACAATGAAATTTATCTTCTGATTTCGCCCATTAATAATGAGTTCA
ATCTTTGAATCTATTGCAATTAGctgcaaataaaaaaacaatttaatttc
taaatttgagaTGTAAGTTCACATTTGTTGATGATATGATAGCATGTTAA
TGGCTTACAGTTGTGGTATTTTGTTTATTGGTATCCGTTAGATTGATTTA
ACGGATTTTCTGACCCTTCCCtactgaaatatttcaaaatatgtaacatt
aaaaattaattttgtaattttatcttcggtgattttttaatttgtttagt
ATTCTTTATAGATGTAAAATATACTTGGTTTAAAAAGTNACGGATTTTCT
GACCCTTCCCtactgaaatatttcaaaatatgtaacattaaaaattaatt
ttgtaattttatcttcggtgattttttaatttgtttagtATTCTTTATAG
ATGTAAAATATACTTGATTTAAAAAGTTCCAATTCACGCCAGCCAgagca
tttttttaattattttagatttttggaaattttgtttgCTCGTACACAGT
TACATAATGAGAATACACGTGTTTCCTATTagcggattcatgtaaaaaag
tcacgaaaaac
Run BLAST on NCBI

transcript from alignment at sc0007264:333..1043

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045235 ID=TCONS_00045235|Name=TCONS_00045235|organism=Clytia hemisphaerica|type=transcript|length=711bp|location=Sequence derived from alignment at sc0007264:333..1043 (Clytia hemisphaerica)
gtttttcgtgacttttttacatgaatccgctAATAGGAAACACGTGTATT
CTCATTATGTAACTGTGTACGAGcaaacaaaatttccaaaaatctaaaat
aattaaaaaaatgctcTGGCTGGCGTGAATTGGAACTTTTTAAATCAAGT
ATATTTTACATCTATAAAGAATactaaacaaattaaaaaatcaccgaaga
taaaattacaaaattaatttttaatgttacatattttgaaatatttcagt
aGGGAAGGGTCAGAAAATCCGTNACTTTTTAAACCAAGTATATTTTACAT
CTATAAAGAATactaaacaaattaaaaaatcaccgaagataaaattacaa
aattaatttttaatgttacatattttgaaatatttcagtaGGGAAGGGTC
AGAAAATCCGTTAAATCAATCTAACGGATACCAATAAACAAAATACCACA
ACTGTAAGCCATTAACATGCTATCATATCATCAACAAATGTGAACTTACA
tctcaaatttagaaattaaattgtttttttatttgcagCTAATTGCAATA
GATTCAAAGATTGAACTCATTATTAATGGGCGAAATCAGAAGATAAATTT
CATTGTTGGAATGAAATAAAATACATAATTTGAGGTGTGGTGTCCTCTGT
CATTTCAGTTACATAAAATTGAGTACATTTTCTCGATAAGCATACTAATA
AATAATGGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028817XLOC_028817Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045235-exon-sc0007264-1491911889:333..1043TCONS_00045235-exon-sc0007264-1491911889:333..1043Clytia hemisphaericaexon
TCONS_00045235-exon-sc0007264-1510915933:333..1043TCONS_00045235-exon-sc0007264-1510915933:333..1043Clytia hemisphaericaexon
TCONS_00045235-exon-sc0007264-1575043694:333..1043TCONS_00045235-exon-sc0007264-1575043694:333..1043Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007264supercontigsc0007264:333..1043 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.139844	0.0820878	0	0	0	0	0	0	0.073768	0	0	0	0	0	0	0	0	0	0	0.136661	0.304724	2.75121	4.56753	0.834661	0.338598	1.36163	0.620527	0.0790293	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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