TCONS_00045227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045227
Unique NameTCONS_00045227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045227 ID=TCONS_00045227|Name=TCONS_00045227|organism=Clytia hemisphaerica|type=transcript|length=360bp
aaaaccctGTTTATGGGTCACTTTCTTCATCCTTCTTGGTGAAGTTTCAG
TTTGAAATTGCTTTACTTTATAAAATTCTCTTTAGGGCACTGATGATCAA
CATTCCAGCTTACGAAAAGTTTAAAGCAGCCACTCTCACGTGTGGTGAAC
CGCCAAACGAGACTGCAATTGACCATTTAGATGGGATAGCAAGGCGCTTT
CAGCATCCAGTCTATGCAGAGCCTGAGGTGGCCTTACTTTTCCAGAAGAA
TGAATTCGACACAGTGCAAATGGATGTCATTGAAGTCAACTTACTGGATG
CTCTAAAAGGGGAGAACCAAATGGTCTTATTCAACCAAATCGCTAACTTC
TTACGAATAA
Run BLAST on NCBI

transcript from alignment at sc0007244:193..1057+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045227 ID=TCONS_00045227|Name=TCONS_00045227|organism=Clytia hemisphaerica|type=transcript|length=865bp|location=Sequence derived from alignment at sc0007244:193..1057+ (Clytia hemisphaerica)
aaaaccctGTTTATGGGTCACTTTCTTCATCCTTCTTGGTGAAGTTTCAG
TTTGAAATTGCTTTACTTTATAAAATTCTCTTTAGGGCACTGATGATCAA
CATTCCAGCTTACGAAAAGTTTAAAGCAGCCACTCTCACGTGTGGTGAAC
CGCCAAACGAGACTGCAATTGACCATTTAGATGGGATAGCAAGGCGCTTT
CAGCATCCAGTCTATGCAGAGCCTGAGGTGGCCTTACTTTTCCAGAAGAA
TGAATTCGACACAGTGCAAATGGATGTCATTGAAGTCAACTTACTGGATG
CTCTAAAAGGGGTGAGATCAATGAAattatttattgttttttttacaaaa
aagataTTCTATATGAATATCTGGGTGAAAATTACCCGAATCATAAGAAt
accctaaaaatttgaaaatttataccATCATGTGTTTGATGGCGTGGTTT
AGAAAATGAAAGCTTTTAGATACAAATACCTTGATACCTAAGTCTTGACA
GAGAAATTGTAATAAATAGTCCCATAAGCGTTTACATGCCAATTGCCAAA
AATCTGAAATACGgtgaactctctctaattcgaacctctcctattcaaat
ctttctataaatcaAACTAGAATATTGATCCTCTCAGCTAGAAAGTAGTA
TAAAAtactctgtaattcgaatctttctctaattcgaagaaaaccTTAGG
TCCCTTTAAGATCGAACtaagagagtcaactgtatagtTAACGAAAATCC
CTCCCTCTACCAAACTAATATAATAAAACAGGCTAGCTTCAACTGTTatt
gtttttttacaagaagGAGAACCAAATGGTCTTATTCAACCAAATCGCTA
ACTTCTTACGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028809XLOC_028809Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045227-exon-sc0007244-1491911889:193..503TCONS_00045227-exon-sc0007244-1491911889:193..503Clytia hemisphaericaexon
TCONS_00045227-exon-sc0007244-1510915933:193..503TCONS_00045227-exon-sc0007244-1510915933:193..503Clytia hemisphaericaexon
TCONS_00045227-exon-sc0007244-1575043694:193..503TCONS_00045227-exon-sc0007244-1575043694:193..503Clytia hemisphaericaexon
TCONS_00045227-exon-sc0007244-1491911889:1009..1057TCONS_00045227-exon-sc0007244-1491911889:1009..1057Clytia hemisphaericaexon
TCONS_00045227-exon-sc0007244-1510915933:1009..1057TCONS_00045227-exon-sc0007244-1510915933:1009..1057Clytia hemisphaericaexon
TCONS_00045227-exon-sc0007244-1575043694:1009..1057TCONS_00045227-exon-sc0007244-1575043694:1009..1057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007244supercontigsc0007244:193..1057 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.18839	1.59615	0.520527	12.1154	11.3172	18.1241	17.94	8.00967	18.4689	10.634	18.1513	16.5752	28.7445	22.8291	17.8521	12.6078	14.7178	5.78895	5.88367	7.52373	6.96927	2.44779	8.10048	23.3757	22.7112	5.47819	2.4659	5.47634	3.28896
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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