TCONS_00045216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045216
Unique NameTCONS_00045216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045216 ID=TCONS_00045216|Name=TCONS_00045216|organism=Clytia hemisphaerica|type=transcript|length=457bp
ctttgttgtttttgtaaccTTTAGAGTAACTTGGGATTTTCAGAAGACAG
ACCCTTTCCGTCGGCACATACCAAACACCTTTTTTACCTCTCCTTTCTCC
ATAGTGAATTGGTTTATTAGTCACTGTTAAAGATTAAGTGGGACACCATC
ATTACAAGTACAATTAACTCGTGTTAAAGCATGGGAAAAACTTATTTTAA
TACAGTTTCATTTGTCCGTAGGCTGTGATCGGGAAATGGCAGAAGCTCTT
GGTTCGAAGGAGAAATTAATGTTTGAGATTGAACGTATGGCTGCCAATAT
TGCATATCAAATGTTAAATTTACATACCAACAATCAACATATGGTTGATC
TCGATATCCAGACGGAACAAGGTATGATCATCAACagtttacacccctgt
ctcacagccccattGAAGCTTTTTCCCAACGCAGCGGGGATAAACATTTC
TATAGAA
Run BLAST on NCBI

transcript from alignment at sc0007219:98..554

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045216 ID=TCONS_00045216|Name=TCONS_00045216|organism=Clytia hemisphaerica|type=transcript|length=457bp|location=Sequence derived from alignment at sc0007219:98..554 (Clytia hemisphaerica)
TTCTATAGAAATGTTTATCCCCGCTGCGTTGGGAAAAAGCTTCaatgggg
ctgtgagacaggggtgtaaactGTTGATGATCATACCTTGTTCCGTCTGG
ATATCGAGATCAACCATATGTTGATTGTTGGTATGTAAATTTAACATTTG
ATATGCAATATTGGCAGCCATACGTTCAATCTCAAACATTAATTTCTCCT
TCGAACCAAGAGCTTCTGCCATTTCCCGATCACAGCCTACGGACAAATGA
AACTGTATTAAAATAAGTTTTTCCCATGCTTTAACACGAGTTAATTGTAC
TTGTAATGATGGTGTCCCACTTAATCTTTAACAGTGACTAATAAACCAAT
TCACTATGGAGAAAGGAGAGGTAAAAAAGGTGTTTGGTATGTGCCGACGG
AAAGGGTCTGTCTTCTGAAAATCCCAAGTTACTCTAAAggttacaaaaac
aacaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028799XLOC_028799Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045216-exon-sc0007219-1491911889:98..554TCONS_00045216-exon-sc0007219-1491911889:98..554Clytia hemisphaericaexon
TCONS_00045216-exon-sc0007219-1510915933:98..554TCONS_00045216-exon-sc0007219-1510915933:98..554Clytia hemisphaericaexon
TCONS_00045216-exon-sc0007219-1575043694:98..554TCONS_00045216-exon-sc0007219-1575043694:98..554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007219supercontigsc0007219:98..554 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.614177	0.448799	0.183238	0	7.74528	9.63708	12.2021	12.8087	5.08787	3.06499	5.39596	3.78631	6.14304	2.61081	0.172353	0.542267	0.990855	0.932739	1.58263	1.16142	0.931961	0.465476	0.34391	0	4.63563	2.49583	1.49835	1.57412	0	0.367265
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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