TCONS_00045214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045214
Unique NameTCONS_00045214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045214 ID=TCONS_00045214|Name=TCONS_00045214|organism=Clytia hemisphaerica|type=transcript|length=447bp
CATCAAACTCGAAGACAAATCCaagaaatttctcgaaaatgcTCTTATGT
TCCACGAAAACTTAATGCTGTTGAAGTTAAGTCACCTTGTAGTTTGCTCA
AATTCGCACAACAAACTCTTAAAAAGATGATATTGATGTGCCGTTCAAGT
GACGCTCAACAGCCTAAATCGTTTGTCCAAGGAGGTGATTCGAAAAAGTC
TTGTACCCAGTGTGGTGATAATAACGACAATGAAAAGCCCAAAGATATCA
ctataaatttgaatattttctagatatttcaatgttttcaagCAATTTCA
AGAAGAGAAAATTTAATGTTcggttaaaattttaaaatttctataTTGCT
TCTCTAACTGCCGAGTTTTGAATAAACCTAAACGAGTAACAATTTCCAAG
GGCGGTAATTAAGTCATTTTGGTTTAGATACAATTAAATAAGGTCCC
Run BLAST on NCBI

transcript from alignment at sc0007213:634..1080

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045214 ID=TCONS_00045214|Name=TCONS_00045214|organism=Clytia hemisphaerica|type=transcript|length=447bp|location=Sequence derived from alignment at sc0007213:634..1080 (Clytia hemisphaerica)
GGGACCTTATTTAATTGTATCTAAACCAAAATGACTTAATTACCGCCCTT
GGAAATTGTTACTCGTTTAGGTTTATTCAAAACTCGGCAGTTAGAGAAGC
AAtatagaaattttaaaattttaaccgAACATTAAATTTTCTCTTCTTGA
AATTGcttgaaaacattgaaatatctagaaaatattcaaatttatagTGA
TATCTTTGGGCTTTTCATTGTCGTTATTATCACCACACTGGGTACAAGAC
TTTTTCGAATCACCTCCTTGGACAAACGATTTAGGCTGTTGAGCGTCACT
TGAACGGCACATCAATATCATCTTTTTAAGAGTTTGTTGTGCGAATTTGA
GCAAACTACAAGGTGACTTAACTTCAACAGCATTAAGTTTTCGTGGAACA
TAAGAgcattttcgagaaatttcttGGATTTGTCTTCGAGTTTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028797XLOC_028797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045214-exon-sc0007213-1491911889:634..1080TCONS_00045214-exon-sc0007213-1491911889:634..1080Clytia hemisphaericaexon
TCONS_00045214-exon-sc0007213-1510915933:634..1080TCONS_00045214-exon-sc0007213-1510915933:634..1080Clytia hemisphaericaexon
TCONS_00045214-exon-sc0007213-1575043694:634..1080TCONS_00045214-exon-sc0007213-1575043694:634..1080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007213supercontigsc0007213:634..1080 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
328.045	288.778	131.188	108.125	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.332014	0	98.9751	65.2972	0	0	3.05568	10.2718	50.8556	47.3521
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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