TCONS_00045094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045094
Unique NameTCONS_00045094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045094 ID=TCONS_00045094|Name=TCONS_00045094|organism=Clytia hemisphaerica|type=transcript|length=305bp
TTCATATCCTACCAAACCTGCAGTGGCTTGGCTGACcgagcatgactgga
aaatctGCTGTAGTTTAGAGCAAAATGTACCAAGTCTGAAGGGTTTTGGA
GAATTGGTCACCTCCAAACATTTCAATTGTCAAATCGGAAAGATCTCGGT
AAGATagttttcaaaaagtgtcgaAGTCAATAGTGATCTGGAAAAATTGT
TCCTTCAAGATCATGAAAAGATGATGTTCGCCTTCATTGTCAGGCATTTA
TTAGGCATATGTTCAATGAGGccccaagcggttttcgtgatgacgtGATA
GAAAC
Run BLAST on NCBI

transcript from alignment at sc0006895:583..1350-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045094 ID=TCONS_00045094|Name=TCONS_00045094|organism=Clytia hemisphaerica|type=transcript|length=768bp|location=Sequence derived from alignment at sc0006895:583..1350- (Clytia hemisphaerica)
TTCATATCCTACCAAACCTGCAGTGGCTTGGCTGACCGAGCATGACTGGA
AAATCTGCTGTAGTTTAGAGGTATGAAATTCACCATTTTTAACTTTACCC
CTTTAAAAAAAAATTCAAAGTAAATGAGTTCTGTTATGATAGACTGGATA
GTCGTTTATAATCTATGTAATACAGAAATATGGTTGTTATATGACAATAC
GACAATACGGGATAACGTCAGTCTAAACTACCGGTATAAACTACATACCA
GTATATAGACTTCAGTTTGTCCCTTACTTTTTTCGTTTTTTTTTTTTTTG
CTAGGCTAGTTAGTGTTATGAGGAATTCTGGATACTTTTGACATACGCTT
TCAAACTCACGAGGCTCAAAAATACACTTAAAACGGTATCAAGTACTTCC
CTTATTCATATGCAACCCATTGGTCATTCTCGTTGTTTAAACACTAATGT
AATCTTATTCTGTCTTTTTAATCATTTTTAGCAAAATGTACCAAGTCTGA
AGGGTTTTGGAGAATTGGTCACCNCATTTTTAGCAAAATGTACCAAGTCT
GAAGGGTTTTGGAGAATTGGTCACCTCCAAACATTTCAATTGTCAAATCG
GAAAGATCTCGGTAAGATAGTTTTCAAAAAGTGTCGAAGTCAATAGTGAT
CTGGAAAAATTGTTCCTTCAAGATCATGAAAAGATGATGTTCGCCTTCAT
TGTCAGGCATTTATTAGGCATATGTTCAATGAGGCCCCAAGCGGTTTTCG
TGATGACGTGATAGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028677XLOC_028677Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045094-exon-sc0006895-1575043694:1281..1350TCONS_00045094-exon-sc0006895-1575043694:1281..1350Clytia hemisphaericaexon
TCONS_00045094-exon-sc0006895-1575043694:583..817TCONS_00045094-exon-sc0006895-1575043694:583..817Clytia hemisphaericaexon
TCONS_00045094-exon-sc0006895-1510915933:1281..1350TCONS_00045094-exon-sc0006895-1510915933:1281..1350Clytia hemisphaericaexon
TCONS_00045094-exon-sc0006895-1510915933:583..817TCONS_00045094-exon-sc0006895-1510915933:583..817Clytia hemisphaericaexon
TCONS_00045094-exon-sc0006895-1491911889:1281..1350TCONS_00045094-exon-sc0006895-1491911889:1281..1350Clytia hemisphaericaexon
TCONS_00045094-exon-sc0006895-1491911889:583..817TCONS_00045094-exon-sc0006895-1491911889:583..817Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006895supercontigsc0006895:583..1350 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.21562	0.720192	3.76295	6.13577	1.99192	0.787022	0	0	6.84588	13.8759	13.4683	12.2966	2.70149	1.02019	0.62905	0.90009	1.10884	2.84131	3.14033	2.4646	2.85625	2.61221	2.96378	3.46437	0	0	2.53171	7.56534	1.63944	1.67033
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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