TCONS_00045088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045088
Unique NameTCONS_00045088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045088 ID=TCONS_00045088|Name=TCONS_00045088|organism=Clytia hemisphaerica|type=transcript|length=760bp
NNTTTTTTTgtagtattttatttatttggttCAATGATCTGGTATCAGAG
AACTTTAGGACGtcttaatatttaatatttgattGTAAATTAATATAGAA
TTTAATCCACTTACGTTCGATGTTGTCTTCCTTATTATAGGATTTCCGAG
GTGGCAACCCATCCCAAGGAAGCACTGGCCAAAATGATGACGGTCGCACT
ACCTCGGGCTCCGTGGGGAAGCACGGCGCACGGAAAGGCTCGTAGGAATC
GGGGAATTCCAGAATCAAGGTGAAACCTATTATTGTCTCGACGACCGGCC
GCGGAAGATTGATACCGGAGAGGGCACTACGCATCTCCTGCAACCGCAAC
GCCCATCCACCAGTAACTAAAGAATTCGTTCCCGTGGCCAGTCGCAGCGT
CGAATAAATCATCCCCTCATCCATCCAGCTAGCCTTGTCCTCCGTGGCCG
CGATCCACGATCGATGGGATATCTCTTCGGTGAAGAACAACTGCCGGGGA
GTTCGTTTCCTCTTGATGGTAGGAAACGACAGcgcaacaaaaaataaaaa
cattttgaaaacgtGATTGAGAAATTATAAAATCAAGTCCAAACGAGCGA
TTAAAAACTCAGTAAGCAAATGAGGCTCACTCAAACAAAACGAACTTATC
ATCCAAAGTGAACGAATGAAGACTCAACTAACGTTGAATAGACAACACTC
ACGGACGCGCAAGAATGGCGTCTTATCAAAATCATCACAATCCGACAATT
GAAATGGTGA
Run BLAST on NCBI

transcript from alignment at sc0006884:1..760

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045088 ID=TCONS_00045088|Name=TCONS_00045088|organism=Clytia hemisphaerica|type=transcript|length=760bp|location=Sequence derived from alignment at sc0006884:1..760 (Clytia hemisphaerica)
TCACCATTTCAATTGTCGGATTGTGATGATTTTGATAAGACGCCATTCTT
GCGCGTCCGTGAGTGTTGTCTATTCAACGTTAGTTGAGTCTTCATTCGTT
CACTTTGGATGATAAGTTCGTTTTGTTTGAGTGAGCCTCATTTGCTTACT
GAGTTTTTAATCGCTCGTTTGGACTTGATTTTATAATTTCTCAATCacgt
tttcaaaatgtttttattttttgttgcgCTGTCGTTTCCTACCATCAAGA
GGAAACGAACTCCCCGGCAGTTGTTCTTCACCGAAGAGATATCCCATCGA
TCGTGGATCGCGGCCACGGAGGACAAGGCTAGCTGGATGGATGAGGGGAT
GATTTATTCGACGCTGCGACTGGCCACGGGAACGAATTCTTTAGTTACTG
GTGGATGGGCGTTGCGGTTGCAGGAGATGCGTAGTGCCCTCTCCGGTATC
AATCTTCCGCGGCCGGTCGTCGAGACAATAATAGGTTTCACCTTGATTCT
GGAATTCCCCGATTCCTACGAGCCTTTCCGTGCGCCGTGCTTCCCCACGG
AGCCCGAGGTAGTGCGACCGTCATCATTTTGGCCAGTGCTTCCTTGGGAT
GGGTTGCCACCTCGGAAATCCTATAATAAGGAAGACAACATCGAACGTAA
GTGGATTAAATTCTATATTAATTTACaatcaaatattaaatattaagaCG
TCCTAAAGTTCTCTGATACCAGATCATTGaaccaaataaataaaatacta
cAAAAAAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028671XLOC_028671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045088-exon-sc0006884-1491911889:1..760TCONS_00045088-exon-sc0006884-1491911889:1..760Clytia hemisphaericaexon
TCONS_00045088-exon-sc0006884-1510915933:1..760TCONS_00045088-exon-sc0006884-1510915933:1..760Clytia hemisphaericaexon
TCONS_00045088-exon-sc0006884-1575043694:1..760TCONS_00045088-exon-sc0006884-1575043694:1..760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006884supercontigsc0006884:1..760 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74003	1.6138	1.15422	1.98201	2.14229	1.14063	1.34164	2.03077	1.11342	1.37175	1.97127	1.42169	7.12706	12.864	8.37031	9.29881	3.85712	4.19797	10.7933	6.59337	7.93546	5.71596	2.26211	4.0436	3.70736	5.46837	3.19317	2.20631	0.799189	0.60437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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