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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045087 ID=TCONS_00045087|Name=TCONS_00045087|organism=Clytia hemisphaerica|type=transcript|length=1223bp
TTAATATtgaaccaaaacaaaaaagtaattttgcaatttaaaatggattt
tccattggaagATGTCCAAGGAGGATCATCGGAAGAAGATACAGAATCTT
TGGAAAACAAATCAAGTACATCATGTGATGAGAATGAAGTTATGGATTAC
TACCATCATCATAGAAGATCCAGTTCCATTATTCCTCTTAAATTAAACCA
AACTAACATGGCCTTGAAGCCATACTTTCTTCATAAATCAGAAAAGTATC
CAACCTCGATGCTGACCATGCTTGACAGTTTGCGTAAGAATAATGAGCTA
TGTGATGTTTTGATTTGTGTTGGATCGAAAGAGTTTAGATGTCACAAAGT
TGTTCTATCTGCTTGTTGCCCATATTTCAGAGCAATGTTTACCAGAGAAA
TGGCAGAAAGCAGGAAAAATGAGGTGACGATTAAAGATGTTGATGAAAAA
GCAATGGAACAGTTAATTGATTTTGCATACACATCCatcatcaaaattga
tgagaatAACGTACAGACAATTCTTCCAGCAGCTTGCTTACTTCAATTGA
AAGAAATTCAAGACGCTTGTTGtgagtttttgaaaaaacaattagatCCT
TCAAATTGTTTAGGAATAAAATCATTTGCAGATACACATGCTTGTACAGA
ACTTTTGCATATTGCTGATTTATTCACATTACATAATTTNNNNNNNNNNN
NNATGCTTCTTCTGTTAGATCAACTTTGTGATATCATCGCAAGTGATGAA
CTAAATGTTATTTCTGAAGAAGAGGTATTTTTATCGGTAATGAAATGGGT
ACGATTTAATATAAGTGACAGACGTTCAAGCCTGAAACAGGTTCTTAAAC
ATGTTCGATTACCATTATTAAATGCAAGATTTCTGGTTGGTGTTGTAAGT
GCTGATTTGTTAATAAAAAGTGATGAGAATTGCAGAGAACTTGTTGATGA
AGCTAAGAACTACTTGCTTTTACCAGAAGAACGACTTCTGAAGCAGGGTT
CCAGGTTTAAAGCTAGACAACCCACTAAAAGAGGTGAAGTTTTGTTTGCA
GTTGGTGGTTGGTGTACTGGGGATGCAATTAACAGTGTTGAAAGgtaatt
ttatttcataataatTTCCTTTTGTCAGTTgtattcattttttcatttat
tcttTATTCCCAAGGGCCTTGATAAATAAAAGGAGTTCAGGATTGGGTTT
TTCATTACTTTGAAGTCTTGCCG Run BLAST on NCBI protein sequence of TCONS_00045087-protein >TCONS_00045087-protein ID=TCONS_00045087-protein|Name=TCONS_00045087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
LILNQNKKVILQFKMDFPLEDVQGGSSEEDTESLENKSSTSCDENEVMDY
YHHHRRSSSIIPLKLNQTNMALKPYFLHKSEKYPTSMLTMLDSLRKNNEL
CDVLICVGSKEFRCHKVVLSACCPYFRAMFTREMAESRKNEVTIKDVDEK
AMEQLIDFAYTSIIKIDENNVQTILPAACLLQLKEIQDACCEFLKKQLDP
SNCLGIKSFADTHACTELLHIADLFTLHNXXXXXMLLLLDQLCDIIASDE
LNVISEEEVFLSVMKWVRFNISDRRSSLKQVLKHVRLPLLNARFLVGVVS
ADLLIKSDENCRELVDEAKNYLLLPEERLLKQGSRFKARQPTKRGEVLFA
VGGWCTGDAINSVER Run BLAST on NCBI transcript from alignment at sc0006880:144..1366 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045087 ID=TCONS_00045087|Name=TCONS_00045087|organism=Clytia hemisphaerica|type=transcript|length=1223bp|location=Sequence derived from alignment at sc0006880:144..1366 (Clytia hemisphaerica)
CGGCAAGACTTCAAAGTAATGAAAAACCCAATCCTGAACTCCTTTTATTT
ATCAAGGCCCTTGGGAATAaagaataaatgaaaaaatgaatacAACTGAC
AAAAGGAAattattatgaaataaaattacCTTTCAACACTGTTAATTGCA
TCCCCAGTACACCAACCACCAACTGCAAACAAAACTTCACCTCTTTTAGT
GGGTTGTCTAGCTTTAAACCTGGAACCCTGCTTCAGAAGTCGTTCTTCTG
GTAAAAGCAAGTAGTTCTTAGCTTCATCAACAAGTTCTCTGCAATTCTCA
TCACTTTTTATTAACAAATCAGCACTTACAACACCAACCAGAAATCTTGC
ATTTAATAATGGTAATCGAACATGTTTAAGAACCTGTTTCAGGCTTGAAC
GTCTGTCACTTATATTAAATCGTACCCATTTCATTACCGATAAAAATACC
TCTTCTTCAGAAATAACATTTAGTTCATCACTTGCGATGATATCACAAAG
TTGATCTAACAGAAGAAGCATNNNNNNNNNNNNNAAATTATGTAATGTGA
ATAAATCAGCAATATGCAAAAGTTCTGTACAAGCATGTGTATCTGCAAAT
GATTTTATTCCTAAACAATTTGAAGGatctaattgttttttcaaaaactc
aCAACAAGCGTCTTGAATTTCTTTCAATTGAAGTAAGCAAGCTGCTGGAA
GAATTGTCTGTACGTTattctcatcaattttgatgatGGATGTGTATGCA
AAATCAATTAACTGTTCCATTGCTTTTTCATCAACATCTTTAATCGTCAC
CTCATTTTTCCTGCTTTCTGCCATTTCTCTGGTAAACATTGCTCTGAAAT
ATGGGCAACAAGCAGATAGAACAACTTTGTGACATCTAAACTCTTTCGAT
CCAACACAAATCAAAACATCACATAGCTCATTATTCTTACGCAAACTGTC
AAGCATGGTCAGCATCGAGGTTGGATACTTTTCTGATTTATGAAGAAAGT
ATGGCTTCAAGGCCATGTTAGTTTGGTTTAATTTAAGAGGAATAATGGAA
CTGGATCTTCTATGATGATGGTAGTAATCCATAACTTCATTCTCATCACA
TGATGTACTTGATTTGTTTTCCAAAGATTCTGTATCTTCTTCCGATGATC
CTCCTTGGACATcttccaatggaaaatccattttaaattgcaaaattact
tttttgttttggttcaATATTAA Coding sequence (CDS) from alignment at sc0006880:144..1366 >TCONS_00045087 ID=TCONS_00045087|Name=TCONS_00045087|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0006880:144..1366 (Clytia hemisphaerica)
ttacCTTTCAACACTGTTAATTGCATCCCCAGTACACCAACCACCAACTG
CAAACAAAACTTCACCTCTTTTAGTGGGTTGTCTAGCTTTAAACCTGGAA
CCCTGCTTCAGAAGTCGTTCTTCTGGTAAAAGCAAGTAGTTCTTAGCTTC
ATCAACAAGTTCTCTGCAATTCTCATCACTTTTTATTAACAAATCAGCAC
TTACAACACCAACCAGAAATCTTGCATTTAATAATGGTAATCGAACATGT
TTAAGAACCTGTTTCAGGCTTGAACGTCTGTCACTTATATTAAATCGTAC
CCATTTCATTACCGATAAAAATACCTCTTCTTCAGAAATAACATTTAGTT
CATCACTTGCGATGATATCACAAAGTTGATCTAACAGAAGAAGCATNNNN
NNNNNNNNNAAATTATGTAATGTGAATAAATCAGCAATATGCAAAAGTTC
TGTACAAGCATGTGTATCTGCAAATGATTTTATTCCTAAACAATTTGAAG
GatctaattgttttttcaaaaactcaCAACAAGCGTCTTGAATTTCTTTC
AATTGAAGTAAGCAAGCTGCTGGAAGAATTGTCTGTACGTTattctcatc
aattttgatgatGGATGTGTATGCAAAATCAATTAACTGTTCCATTGCTT
TTTCATCAACATCTTTAATCGTCACCTCATTTTTCCTGCTTTCTGCCATT
TCTCTGGTAAACATTGCTCTGAAATATGGGCAACAAGCAGATAGAACAAC
TTTGTGACATCTAAACTCTTTCGATCCAACACAAATCAAAACATCACATA
GCTCATTATTCTTACGCAAACTGTCAAGCATGGTCAGCATCGAGGTTGGA
TACTTTTCTGATTTATGAAGAAAGTATGGCTTCAAGGCCATGTTAGTTTG
GTTTAATTTAAGAGGAATAATGGAACTGGATCTTCTATGATGATGGTAGT
AATCCATAACTTCATTCTCATCACATGATGTACTTGATTTGTTTTCCAAA
GATTCTGTATCTTCTTCCGATGATCCTCCTTGGACATcttccaatggaaa
atccattttaaattgcaaaattacttttttgttttggttcaATATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045087-exon-sc0006880-1491911889:144..1366 | TCONS_00045087-exon-sc0006880-1491911889:144..1366 | Clytia hemisphaerica | exon |
| TCONS_00045087-exon-sc0006880-1510915933:144..1366 | TCONS_00045087-exon-sc0006880-1510915933:144..1366 | Clytia hemisphaerica | exon |
| TCONS_00045087-exon-sc0006880-1575043694:144..1366 | TCONS_00045087-exon-sc0006880-1575043694:144..1366 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006880 | supercontig | sc0006880:144..1366 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00045087 vs. Swiss-Prot (Human)
Match: KLH20 (Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4) HSP 1 Score: 393.66 bits (1010), Expect = 6.699e-131 Identity = 192/300 (64.00%), Postives = 236/300 (78.67%), Query Frame = 1
Query: 211 ALKPYFLHKSEKYPTSMLTMLDSLRKNNELCDVLICVGSKEFRCHKVVLSACCPYFRAMFTREMAESRKNEVTIKDVDEKAMEQLIDFAYTSIIKIDENNVQTILPAACLLQLKEIQDACCEFLKKQLDPSNCLGIKSFADTHACTELLHIADLFTLHNXXXXXXXX-----XXXXXCDIIASDELNVISEEEVFLSVMKWVRFNISDRRSSLKQVLKHVRLPLLNARFLVGVVSADLLIKSDENCRELVDEAKNYLLLPEERLLKQGSRFKARQPTKRGEVLFAVGGWCTGDAINSVER 1095
A PY S+K+P L +++ LRK+ ELCDV++ VG+K+ H+V+LSAC PYFRAMFT E+AESR+ EV I+D+DE+AME LIDFAYTS I ++E NVQT+LPAACLLQL EIQ+ACCEFLK+QLDPSNCLGI++FADTH+C ELL IAD FT HN +QL DII+SDELNV SEE+VF +VM WV+++I +RR L QVL+HVRLPLL+ +FLVG V +D LIKSDE CR+LVDEAKNYLLLP+ER L QG R + R+P + GEVLFAVGGWC+GDAI+SVER
Sbjct: 41 ARMPYI---SDKHPRQTLEVINLLRKHRELCDVVLVVGAKKIYAHRVILSACSPYFRAMFTGELAESRQTEVVIRDIDERAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLLPQERPLMQGPRTRPRKPIRCGEVLFAVGGWCSGDAISSVER 337
The following BLAST results are available for this feature:
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