|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045079 ID=TCONS_00045079|Name=TCONS_00045079|organism=Clytia hemisphaerica|type=transcript|length=536bp
GGAACCATTGAAGATACAGAAATGGTAGATGGTCTCGTCCTTGATCACAG
GATTTCACATTTTGCTGAAGGTGTTGGTCGTATAGAGAAAGCTAAAATTG
GACTCATTCAATTCTGCATTTCTCCTCCCAAAACTGACATGGAAAACAAC
GTTATTGTTAGTGACTACACACAAATGGACAGAGTTTTACGAGAAGAGAG
ACAATACATACTTAGCATTTGTAAACAAATCAAGAAATCTGGTTGCAATG
TTGTCTTACTAcagaaatcaattttaagGGATGCAATTAATGATATGGGG
TTACATTTCCTCGGCAAAATGAAAATCATGGTTGTCAGAGATATCGAACG
AAACGAAGTAGATTTCATTTGCAAAACATTAAATTGTCGCCCAATTGCCA
GTGTTGACCATTTGAATCCTGAAATGTTGGGATCTGCTGATCTCGTTGAA
GAATTCTCTACAGGTGCAGCTAAAGTTGTAAAGGTAAAGCTCATTGTTTG
TAGAAAATTCTTCTGAAACTTTTTTCTCTTTAGCCt Run BLAST on NCBI protein sequence of TCONS_00045079-protein >TCONS_00045079-protein ID=TCONS_00045079-protein|Name=TCONS_00045079-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
GTIEDTEMVDGLVLDHRISHFAEGVGRIEKAKIGLIQFCISPPKTDMENN
VIVSDYTQMDRVLREERQYILSICKQIKKSGCNVVLLQKSILRDAINDMG
LHFLGKMKIMVVRDIERNEVDFICKTLNCRPIASVDHLNPEMLGSADLVE
EFSTGAAKVVKVKLIVCRKFF Run BLAST on NCBI transcript from alignment at sc0006845:41..1401- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045079 ID=TCONS_00045079|Name=TCONS_00045079|organism=Clytia hemisphaerica|type=transcript|length=1361bp|location=Sequence derived from alignment at sc0006845:41..1401- (Clytia hemisphaerica)
GGAACCATTGAAGATACAGAAATGGTAGATGGTCTCGTCCTTGATCACAG
GATTTCACATTTTGCTGAAGGTGTTGGTCGTATAGAGAAAGCTAAAATTG
GACTCATTCAATTCTGCATTTCTCCTCCCAAAACTGACATGGAAAACAAC
GTTATTGTTAGTGACTACACACAAATGGACAGAGTTTTACGAGAAGAGAG
ACAATACATACTTAGCATTTGTAAACAAATCAAGAAATCTGGTTGCAATG
TTGTCTTACTACAGAAATCAATTTTAAGGTACAACTAATCTCAGATTAAA
AGCTTTTACATGTGATACATTATTCAACGGGTGTAGTATGAAGGTAGAGT
GTCTAGCAACGCTGTGCAAGGTTGTAGGTTCTAACCCCGGCCTAGTTATG
CCAAAGATTCCCAAATGATGCCTCTCTGCTTGATGCTCAGTAACTACGGA
GATGGATCAAGGGTAAGTGGAGAAATCCATTGAAAGGAGTAGTGCCCTCC
CCTACTTTCGGGTAGATAGCTTGAGAAAAGGGAGAATTGGGGTCGCCCTG
AACTGCAGTTNTGGAGAAATCCATTGAAAGGAGTAGTGCCCTCCCCTACT
TTCGGGTAGATAGCTTGAGAAAAGGGAGAATTGGGGTCGCCCTGAACTGC
AGTTGCAAACTTACTATTCACCTCCGACATGTCAGGCTGAAGAATGTACT
TGGTTTTACTCATTTGCATCGACATTTACTTTAGTATCAGCTGTAGCCCT
TTGAAATAAGAAAGTGGTAATACTATGTAAAGCCTGTTACAAATTTTAGG
GATGCAATTAATGATATGGGGTTACATTTCCTCGGCAAAATGAAAATCAT
GGTTGTCAGAGATATCGAACGAAACGAAGTAGATTTCATTTGCAAAGTAA
GTTACTCTCACAACTCTCTGTAAAAAAAACGTTATGTCTAAAAATTGGAA
AAATTTGTCACTTGAAATTGATTGAATATAGTTGTTCTGGTGTTGACTGT
TCTGTTGTTCCGTAGCAGTCGCGAAACCAACACATCTGGCTAATGTACTA
CTCAATTTCTTTTGTTATTTAAAAGTAACTTTCCCTCGAAACATAGTCAT
CAAAACACAAGTTTTTTTCAGAGACTTGAGAATTTTTTCAAACTTATACG
ACTTGGTCTTGTCTGTTGATTGGTCTGATCTAATTATTTTCTTCTCATAG
ACATTAAATTGTCGCCCAATTGCCAGTGTTGACCATTTGAATCCTGAAAT
GTTGGGATCTGCTGATCTCGTTGAAGAATTCTCTACAGGTGCAGCTAAAG
TTGTAAAGGTAAAGCTCATTGTTTGTAGAAAATTCTTCTGAAACTTTTTT
CTCTTTAGCCT Coding sequence (CDS) from alignment at sc0006845:41..1401- >TCONS_00045079 ID=TCONS_00045079|Name=TCONS_00045079|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at sc0006845:41..1401- (Clytia hemisphaerica)
ACATTAAATTGTCGCCCAATTGCCAGTGTTGACCATTTGAATCCTGAAAT
GTTGGGATCTGCTGATCTCGTTGAAGAATTCTCTACAGGTGCAGCTAAAG
TTGTAAAGGTAAAGCTCATTGTTTGTAGAAAATTCTTCTGAGGATGCAAT
TAATGATATGGGGTTACATTTCCTCGGCAAAATGAAAATCATGGTTGTCA
GAGATATCGAACGAAACGAAGTAGATTTCATTTGCAAAGGAACCATTGAA
GATACAGAAATGGTAGATGGTCTCGTCCTTGATCACAGGATTTCACATTT
TGCTGAAGGTGTTGGTCGTATAGAGAAAGCTAAAATTGGACTCATTCAAT
TCTGCATTTCTCCTCCCAAAACTGACATGGAAAACAACGTTATTGTTAGT
GACTACACACAAATGGACAGAGTTTTACGAGAAGAGAGACAATACATACT
TAGCATTTGTAAACAAATCAAGAAATCTGGTTGCAATGTTGTCTTACTAC
AGAAATCAATTTTAAGACATTAAATTGTCGCCCAATTGCCAGTGTTGACC
ATTTGAATCCTGAAATGTTGGGATCTGCTGATCTCGTTGAAGAATTCTCT
ACAGGTGCAGCTAAAGTTGTAAAGGTAAAGCTCATTGTTTGTAGAAAATT
CTTCTGAGGATGCAATTAATGATATGGGGTTACATTTCCTCGGCAAAATG
AAAATCATGGTTGTCAGAGATATCGAACGAAACGAAGTAGATTTCATTTG
CAAAGGAACCATTGAAGATACAGAAATGGTAGATGGTCTCGTCCTTGATC
ACAGGATTTCACATTTTGCTGAAGGTGTTGGTCGTATAGAGAAAGCTAAA
ATTGGACTCATTCAATTCTGCATTTCTCCTCCCAAAACTGACATGGAAAA
CAACGTTATTGTTAGTGACTACACACAAATGGACAGAGTTTTACGAGAAG
AGAGACAATACATACTTAGCATTTGTAAACAAATCAAGAAATCTGGTTGC
AATGTTGTCTTACTACAGAAATCAATTTTAAGACATTAAATTGTCGCCCA
ATTGCCAGTGTTGACCATTTGAATCCTGAAATGTTGGGATCTGCTGATCT
CGTTGAAGAATTCTCTACAGGTGCAGCTAAAGTTGTAAAGGTAAAGCTCA
TTGTTTGTAGAAAATTCTTCTGAGGATGCAATTAATGATATGGGGTTACA
TTTCCTCGGCAAAATGAAAATCATGGTTGTCAGAGATATCGAACGAAACG
AAGTAGATTTCATTTGCAAAGGAACCATTGAAGATACAGAAATGGTAGAT
GGTCTCGTCCTTGATCACAGGATTTCACATTTTGCTGAAGGTGTTGGTCG
TATAGAGAAAGCTAAAATTGGACTCATTCAATTCTGCATTTCTCCTCCCA
AAACTGACATGGAAAACAACGTTATTGTTAGTGACTACACACAAATGGAC
AGAGTTTTACGAGAAGAGAGACAATACATACTTAGCATTTGTAAACAAAT
CAAGAAATCTGGTTGCAATGTTGTCTTACTACAGAAATCAATTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045079-exon-sc0006845-1575043694:1124..1401 | TCONS_00045079-exon-sc0006845-1575043694:1124..1401 | Clytia hemisphaerica | exon |
| TCONS_00045079-exon-sc0006845-1575043694:506..602 | TCONS_00045079-exon-sc0006845-1575043694:506..602 | Clytia hemisphaerica | exon |
| TCONS_00045079-exon-sc0006845-1575043694:41..201 | TCONS_00045079-exon-sc0006845-1575043694:41..201 | Clytia hemisphaerica | exon |
| TCONS_00045079-exon-sc0006845-1510915933:1124..1401 | TCONS_00045079-exon-sc0006845-1510915933:1124..1401 | Clytia hemisphaerica | exon |
| TCONS_00045079-exon-sc0006845-1510915933:506..602 | TCONS_00045079-exon-sc0006845-1510915933:506..602 | Clytia hemisphaerica | exon |
| TCONS_00045079-exon-sc0006845-1510915933:41..201 | TCONS_00045079-exon-sc0006845-1510915933:41..201 | Clytia hemisphaerica | exon |
| TCONS_00045079-exon-sc0006845-1491911889:1124..1401 | TCONS_00045079-exon-sc0006845-1491911889:1124..1401 | Clytia hemisphaerica | exon |
| TCONS_00045079-exon-sc0006845-1491911889:506..602 | TCONS_00045079-exon-sc0006845-1491911889:506..602 | Clytia hemisphaerica | exon |
| TCONS_00045079-exon-sc0006845-1491911889:41..201 | TCONS_00045079-exon-sc0006845-1491911889:41..201 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006845 | supercontig | sc0006845:41..1401 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
Blast
BLAST of TCONS_00045079 vs. Swiss-Prot (Human)
Match: TCPD (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4) HSP 1 Score: 221.476 bits (563), Expect = 7.521e-69 Identity = 100/163 (61.35%), Postives = 136/163 (83.44%), Query Frame = 1
Query: 1 GTIEDTEMVDGLVLDHRISHFAEGVGRIEKAKIGLIQFCISPPKTDMENNVIVSDYTQMDRVLREERQYILSICKQIKKSGCNVVLLQKSILRDAINDMGLHFLGKMKIMVVRDIERNEVDFICKTLNCRPIASVDHLNPEMLGSADLVEEFS-TGAAKVVKV 486
GTI+D E+V+GLVL ++S+ G+ R+EKAKIGLIQFC+S PKTDM+N ++VSDY QMDRVLREER YIL++ KQIKK+GCNV+L+QKSILRDA++D+ LHFL KMKIMV++DIER +++FICKT+ +P+A +D +MLGSA+L EE + G+ K++K+
Sbjct: 216 GTIDDCELVEGLVLTQKVSN--SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKI 376
The following BLAST results are available for this feature:
|
