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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045076 ID=TCONS_00045076|Name=TCONS_00045076|organism=Clytia hemisphaerica|type=transcript|length=540bp
AGAACCAAGAGGTCTTTGTTTGGCTGAGGTTCTCGAACACATCTTAACAA
ACATTGGTCCACAGGAAGACGAATTACTTAAACGACTAGGATTAGAAAAT
GTGGAAGAAGATAATGTTTATGAGCTCCTTAAATTTGTACCTTGGTCTCG
TATCAAGTTTCATCTCGAGCGACTCGAAAGATCAGACATCGTAGATTTTA
TCACTGCAAATACACTTATTACCGAAGACATCAAACTTGCAACTACCAAA
CTCCGATGTAGATACTCTGAAGAAGTCATCATATCCCTTGCCAACCAATC
TTTGAGTGGAAGTCAAGAGACATCGTATTACAACAGTAATGATATGTATA
CAGACTTAGCTGTCCTTAAAGCAAACGTTGTCGACAGTGAAATTGACAAC
TCTGATCGAAAAGCGCTCATGGAACAAAGATATTTCGACAAAGAGAGTAT
TGAACTCGATGATTTGTTTCAGCAAAAGAATGACACTGTATTCGTACGTG
GCGTTGGAGGTATTTTTATTCTTCTAGCTTTTTGTTCAAG Run BLAST on NCBI protein sequence of TCONS_00045076-protein >TCONS_00045076-protein ID=TCONS_00045076-protein|Name=TCONS_00045076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
EPRGLCLAEVLEHILTNIGPQEDELLKRLGLENVEEDNVYELLKFVPWSR
IKFHLERLERSDIVDFITANTLITEDIKLATTKLRCRYSEEVIISLANQS
LSGSQETSYYNSNDMYTDLAVLKANVVDSEIDNSDRKALMEQRYFDKESI
ELDDLFQQKNDTVFVRGVGGIFILLAFCS Run BLAST on NCBI transcript from alignment at sc0006841:322..1400+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045076 ID=TCONS_00045076|Name=TCONS_00045076|organism=Clytia hemisphaerica|type=transcript|length=1079bp|location=Sequence derived from alignment at sc0006841:322..1400+ (Clytia hemisphaerica)
AGAACCAAGAGGTCTTTGTTTGGCTGAGGTTCTCGAACACATCTTAACAA
ACATTGGTCCACAGGAAGACGAATTACTTAAACGACTAGGATTAGAAAAT
GTGGAAGAAGATAATGTTTATGAGCTCCTTAAATTTGTACCTTGGTCTCG
TATCAAGTTTCATCTCGAGCGACTCGAAAGATCAGACATCGTAGATTTTA
TCACTGCAAATACACTTATTACCGAAGGTACAGGTTCTTCCACATTTAGA
TTTTCGCCTATACCTTCCGAATTCATGAGCAAATTAAAACTAGTACCTAG
CTAGATTTCTCAAATGATTTAGTTATTTACAGTTTACACTTTTTGATTCG
CAAAACGTTCCTAAACATTCCTAAACAACGCTTTGCTGTtcaatacgctc
ccttattcgatgaaataaTTAGAGAGTATCAATGAATCGGGttctagggc
aaaatgggttatgGGAATGCGCCGCTggttagggtaccttttttatcCTC
CACCAGTCCCAGTTAGGGTcgcaaaaatactaaaatagaaaaatcagtcc
ctcgtagggtgccttttttggaaaatttggggaaaaagtagaaaatttca
tctcatcatcatcatcaaaattttggaattttagtcccattcagggtcac
ttttttcgcaaatttcgagtcaaccgtcggtcggcaagggtagtaccccc
ccgggtaGTGCTGAAGCCTTAGACCATTCAATCGTGTCTCCTACCTTGTC
TTTTCTGTCTTTGTAGACATCAAACTTGCAACTACCAAACTCCGATGTAG
ATACTCTGAAGAAGTCATCATATCCCTTGCCAACCAATCTTTGAGTGGAA
GTCAAGAGACATCGTATTACAACAGTAATGATATGTATACAGACTTAGCT
GTCCTTAAAGCAAACGTTGTCGACAGTGAAATTGACAACTCTGATCGAAA
AGCGCTCATGGAACAAAGATATTTCGACAAAGAGAGTATTGAACTCGATG
ATTTGTTTCAGCAAAAGAATGACACTGTATTCGTACGTGGCGTTGGAGGT
ATTTTTATTCTTCTAGCTTTTTGTTCAAG Coding sequence (CDS) from alignment at sc0006841:322..1400+ >TCONS_00045076 ID=TCONS_00045076|Name=TCONS_00045076|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at sc0006841:322..1400+ (Clytia hemisphaerica)
GAACCAAGAGGTCTTTGTTTGGCTGAGGTTCTCGAACACATCTTAACAAA
CATTGGTCCACAGGAAGACGAATTACTTAAACGACTAGGATTAGAAAATG
TGGAAGAAGATAATGTTTATGAGCTCCTTAAATTTGTACCTTGGTCTCGT
ATCAAGTTTCATCTCGAGCGACTCGAAAGATCAGACATCGTAGATTTTAT
CACTGCAAATACACTTATTACCGAAGACATCAAACTTGCAACTACCAAAC
TCCGATGTAGATACTCTGAAGAAGTCATCATATCCCTTGCCAACCAATCT
TTGAGTGGAAGTCAAGAGACATCGTATTACAACAGTAATGATATGTATAC
AGACTTAGCTGTCCTTAAAGCAAACGTTGTCGACAGTGAAATTGACAACT
CTGATCGAAAAGCGCTCATGGAACAAAGATATTTCGACAAAGAGAGTATT
GAACTCGATGATTTGTTTCAGCAAAAGAATGACACTGTATTCGTACGTGG
CGTTGGAGGTATTTTTATTCTTCTAGCTTTTTGTTCAGAACCAAGAGGTC
TTTGTTTGGCTGAGGTTCTCGAACACATCTTAACAAACATTGGTCCACAG
GAAGACGAATTACTTAAACGACTAGGATTAGAAAATGTGGAAGAAGATAA
TGTTTATGAGCTCCTTAAATTTGTACCTTGGTCTCGTATCAAGTTTCATC
TCGAGCGACTCGAAAGATCAGACATCGTAGATTTTATCACTGCAAATACA
CTTATTACCGAAGACATCAAACTTGCAACTACCAAACTCCGATGTAGATA
CTCTGAAGAAGTCATCATATCCCTTGCCAACCAATCTTTGAGTGGAAGTC
AAGAGACATCGTATTACAACAGTAATGATATGTATACAGACTTAGCTGTC
CTTAAAGCAAACGTTGTCGACAGTGAAATTGACAACTCTGATCGAAAAGC
GCTCATGGAACAAAGATATTTCGACAAAGAGAGTATTGAACTCGATGATT
TGTTTCAGCAAAAGAATGACACTGTATTCGTACGTGGCGTTGGAGGTATT
TTTATTCTTCTAGCTTTTTGTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045076-exon-sc0006841-1491911889:322..548 | TCONS_00045076-exon-sc0006841-1491911889:322..548 | Clytia hemisphaerica | exon |
| TCONS_00045076-exon-sc0006841-1510915933:322..548 | TCONS_00045076-exon-sc0006841-1510915933:322..548 | Clytia hemisphaerica | exon |
| TCONS_00045076-exon-sc0006841-1575043694:322..548 | TCONS_00045076-exon-sc0006841-1575043694:322..548 | Clytia hemisphaerica | exon |
| TCONS_00045076-exon-sc0006841-1491911889:1088..1400 | TCONS_00045076-exon-sc0006841-1491911889:1088..1400 | Clytia hemisphaerica | exon |
| TCONS_00045076-exon-sc0006841-1510915933:1088..1400 | TCONS_00045076-exon-sc0006841-1510915933:1088..1400 | Clytia hemisphaerica | exon |
| TCONS_00045076-exon-sc0006841-1575043694:1088..1400 | TCONS_00045076-exon-sc0006841-1575043694:1088..1400 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006841 | supercontig | sc0006841:322..1400 + |
Blast
The following BLAST results are available for this feature:
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