TCONS_00045076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045076
Unique NameTCONS_00045076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045076 ID=TCONS_00045076|Name=TCONS_00045076|organism=Clytia hemisphaerica|type=transcript|length=540bp
AGAACCAAGAGGTCTTTGTTTGGCTGAGGTTCTCGAACACATCTTAACAA
ACATTGGTCCACAGGAAGACGAATTACTTAAACGACTAGGATTAGAAAAT
GTGGAAGAAGATAATGTTTATGAGCTCCTTAAATTTGTACCTTGGTCTCG
TATCAAGTTTCATCTCGAGCGACTCGAAAGATCAGACATCGTAGATTTTA
TCACTGCAAATACACTTATTACCGAAGACATCAAACTTGCAACTACCAAA
CTCCGATGTAGATACTCTGAAGAAGTCATCATATCCCTTGCCAACCAATC
TTTGAGTGGAAGTCAAGAGACATCGTATTACAACAGTAATGATATGTATA
CAGACTTAGCTGTCCTTAAAGCAAACGTTGTCGACAGTGAAATTGACAAC
TCTGATCGAAAAGCGCTCATGGAACAAAGATATTTCGACAAAGAGAGTAT
TGAACTCGATGATTTGTTTCAGCAAAAGAATGACACTGTATTCGTACGTG
GCGTTGGAGGTATTTTTATTCTTCTAGCTTTTTGTTCAAG
Run BLAST on NCBI

protein sequence of TCONS_00045076-protein

>TCONS_00045076-protein ID=TCONS_00045076-protein|Name=TCONS_00045076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
EPRGLCLAEVLEHILTNIGPQEDELLKRLGLENVEEDNVYELLKFVPWSR
IKFHLERLERSDIVDFITANTLITEDIKLATTKLRCRYSEEVIISLANQS
LSGSQETSYYNSNDMYTDLAVLKANVVDSEIDNSDRKALMEQRYFDKESI
ELDDLFQQKNDTVFVRGVGGIFILLAFCS
Run BLAST on NCBI

transcript from alignment at sc0006841:322..1400+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045076 ID=TCONS_00045076|Name=TCONS_00045076|organism=Clytia hemisphaerica|type=transcript|length=1079bp|location=Sequence derived from alignment at sc0006841:322..1400+ (Clytia hemisphaerica)
AGAACCAAGAGGTCTTTGTTTGGCTGAGGTTCTCGAACACATCTTAACAA ACATTGGTCCACAGGAAGACGAATTACTTAAACGACTAGGATTAGAAAAT GTGGAAGAAGATAATGTTTATGAGCTCCTTAAATTTGTACCTTGGTCTCG TATCAAGTTTCATCTCGAGCGACTCGAAAGATCAGACATCGTAGATTTTA TCACTGCAAATACACTTATTACCGAAGGTACAGGTTCTTCCACATTTAGA TTTTCGCCTATACCTTCCGAATTCATGAGCAAATTAAAACTAGTACCTAG CTAGATTTCTCAAATGATTTAGTTATTTACAGTTTACACTTTTTGATTCG CAAAACGTTCCTAAACATTCCTAAACAACGCTTTGCTGTtcaatacgctc ccttattcgatgaaataaTTAGAGAGTATCAATGAATCGGGttctagggc aaaatgggttatgGGAATGCGCCGCTggttagggtaccttttttatcCTC CACCAGTCCCAGTTAGGGTcgcaaaaatactaaaatagaaaaatcagtcc ctcgtagggtgccttttttggaaaatttggggaaaaagtagaaaatttca tctcatcatcatcatcaaaattttggaattttagtcccattcagggtcac ttttttcgcaaatttcgagtcaaccgtcggtcggcaagggtagtaccccc ccgggtaGTGCTGAAGCCTTAGACCATTCAATCGTGTCTCCTACCTTGTC TTTTCTGTCTTTGTAGACATCAAACTTGCAACTACCAAACTCCGATGTAG ATACTCTGAAGAAGTCATCATATCCCTTGCCAACCAATCTTTGAGTGGAA GTCAAGAGACATCGTATTACAACAGTAATGATATGTATACAGACTTAGCT GTCCTTAAAGCAAACGTTGTCGACAGTGAAATTGACAACTCTGATCGAAA AGCGCTCATGGAACAAAGATATTTCGACAAAGAGAGTATTGAACTCGATG ATTTGTTTCAGCAAAAGAATGACACTGTATTCGTACGTGGCGTTGGAGGT ATTTTTATTCTTCTAGCTTTTTGTTCAAG

Coding sequence (CDS) from alignment at sc0006841:322..1400+

>TCONS_00045076 ID=TCONS_00045076|Name=TCONS_00045076|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at sc0006841:322..1400+ (Clytia hemisphaerica)
GAACCAAGAGGTCTTTGTTTGGCTGAGGTTCTCGAACACATCTTAACAAA
CATTGGTCCACAGGAAGACGAATTACTTAAACGACTAGGATTAGAAAATG
TGGAAGAAGATAATGTTTATGAGCTCCTTAAATTTGTACCTTGGTCTCGT
ATCAAGTTTCATCTCGAGCGACTCGAAAGATCAGACATCGTAGATTTTAT
CACTGCAAATACACTTATTACCGAAGACATCAAACTTGCAACTACCAAAC
TCCGATGTAGATACTCTGAAGAAGTCATCATATCCCTTGCCAACCAATCT
TTGAGTGGAAGTCAAGAGACATCGTATTACAACAGTAATGATATGTATAC
AGACTTAGCTGTCCTTAAAGCAAACGTTGTCGACAGTGAAATTGACAACT
CTGATCGAAAAGCGCTCATGGAACAAAGATATTTCGACAAAGAGAGTATT
GAACTCGATGATTTGTTTCAGCAAAAGAATGACACTGTATTCGTACGTGG
CGTTGGAGGTATTTTTATTCTTCTAGCTTTTTGTTCAGAACCAAGAGGTC
TTTGTTTGGCTGAGGTTCTCGAACACATCTTAACAAACATTGGTCCACAG
GAAGACGAATTACTTAAACGACTAGGATTAGAAAATGTGGAAGAAGATAA
TGTTTATGAGCTCCTTAAATTTGTACCTTGGTCTCGTATCAAGTTTCATC
TCGAGCGACTCGAAAGATCAGACATCGTAGATTTTATCACTGCAAATACA
CTTATTACCGAAGACATCAAACTTGCAACTACCAAACTCCGATGTAGATA
CTCTGAAGAAGTCATCATATCCCTTGCCAACCAATCTTTGAGTGGAAGTC
AAGAGACATCGTATTACAACAGTAATGATATGTATACAGACTTAGCTGTC
CTTAAAGCAAACGTTGTCGACAGTGAAATTGACAACTCTGATCGAAAAGC
GCTCATGGAACAAAGATATTTCGACAAAGAGAGTATTGAACTCGATGATT
TGTTTCAGCAAAAGAATGACACTGTATTCGTACGTGGCGTTGGAGGTATT
TTTATTCTTCTAGCTTTTTGTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028659XLOC_028659Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045076-proteinTCONS_00045076-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045076-exon-sc0006841-1491911889:322..548TCONS_00045076-exon-sc0006841-1491911889:322..548Clytia hemisphaericaexon
TCONS_00045076-exon-sc0006841-1510915933:322..548TCONS_00045076-exon-sc0006841-1510915933:322..548Clytia hemisphaericaexon
TCONS_00045076-exon-sc0006841-1575043694:322..548TCONS_00045076-exon-sc0006841-1575043694:322..548Clytia hemisphaericaexon
TCONS_00045076-exon-sc0006841-1491911889:1088..1400TCONS_00045076-exon-sc0006841-1491911889:1088..1400Clytia hemisphaericaexon
TCONS_00045076-exon-sc0006841-1510915933:1088..1400TCONS_00045076-exon-sc0006841-1510915933:1088..1400Clytia hemisphaericaexon
TCONS_00045076-exon-sc0006841-1575043694:1088..1400TCONS_00045076-exon-sc0006841-1575043694:1088..1400Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006841supercontigsc0006841:322..1400 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.283319 0.428334 0.352824 0 0.144543 0.103289 0.130513 0.182969 0.0124143 0 0 0 0.689492 2.02869 1.67158 3.50474 0.46098 0.96764 2.24924 1.31903 0.690862 0.182054 1.36871 0.723091 0.717032 1.39524 0.419034 0.15685 2.50297 1.27675
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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