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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045015 ID=TCONS_00045015|Name=TCONS_00045015|organism=Clytia hemisphaerica|type=transcript|length=1548bp
aatttatcaatcacgttttcaaaatgttcttatttttcgttGCGCTGTCG
TTTCCTACCATCAAGAGGAAACGAACTCCCCGGCAGTTATTATTCACCGA
AGAGATAACCCATCGATCGTGGATCGCGGCCGTCATCATTTTGGCTAGTG
CTTCCTTGGGATGGGTTGCCACCTCGGAAATCCTATAATAAGGAAGACAA
CATCGAACGTAAGTGGAAAAATTCTATATTAATTTACAATCAAATATTAA
NNNNNNNNNNNNNNNNNNATCATTTTGGCCAGTGCTTCCTTGGGATGGGT
TGCCACCTCGGAAATCCTATAATAAGGAAGACAACATCGAACGTAAGTGG
AAAAATTCTATATTAATTTACaatcaaatattaaatattaaaacGTCCTA
AAGTTCTCTGATACCAGATCATTGaaccaaataaataaaatactacaaaa
aaaaattttaatcgaCAAATTCTAATCAAATTTTATATACAAATCTTCAT
TTTATGATTCACTAATAACATTCTTGTTACAGTTCCTGATGGTTTTTCTT
CATTACTTTTCAGGGAATAAACTGAAGAACAACCCCGTAAGTCCGTCCGA
GCGTTGGGCTCAGATTAAAGCTGAGCAAGAAGAGCCTGATTGGGATGACG
AATTGAATTGTTCGGAATTGTCGGATTCAGCCGAAGTGATTGAGTAGCTC
GGTAAGTTTTCATTTGTTTGCAATACTTCCGGCCATTGCTCATGTACGGG
AGCTCCTCGTTGCAGTGGTTGAGGCGGTTTCTCATATCTCCACACCGTAA
ACGCTCCgaatttttctttcctcaaTCCCATTCGACGAAGATAATCAGCT
CTGTATTCTTCTGTTGTCAAACGTATTAAGATATCTAGTCGGCGGTCTTC
TTCCCTGATATTGCTTGCTTCTTTGGGTGATCTTCTTTTAAGTCTTGTCA
AGATTATCTCACTGTGCATCCTTCCAAAATACGAAAGAATAAGTTGGGGT
TTTGTGTTTATTATATCCCTTTGCAGTTCGATACAGGGTGCTATCNNNNN
TTCTTTTAAGTCTTGTCAAGATTATCTCACTGTGCATCCTTCCAAAATAC
GAAAGAATAAGTTGGGGTTTTGTGTTTATTATATCCCTTTGCAGTTCGAT
ACAGGGTGCTATCTTCAGCTGTATAAATTGAAAGCGAATTCTTGTGATTG
TGTCTTGATTGATCGCTCACCATGAGGACGACTCGTATTTTCTTTAACAG
CATGGCCTGTTGCTTCTGTGACATAATTTTATCCATCTTGATTTCTAGAT
TCACTCGTCCTGTCGCCAGAAGTAATTGAAAGCTGAGCGTGGACAATCGC
AGCACCATCTTGTCAACCATCAGAATGTTGAACCGTGAAATATaatgatt
ttttgtttcttttatacACCTCACAAAAATTTCGTTTGTTATTTCCTTTC
CTCCACAGCTTCCTTTGTTTCGTCACAATACATATAGTACAAACTTTTGC
GGTACTTCGGTTACCATGATTGCAACTCTTTTAAAATTAATGAGTCTT Run BLAST on NCBI transcript from alignment at sc0006680:1..1548- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045015 ID=TCONS_00045015|Name=TCONS_00045015|organism=Clytia hemisphaerica|type=transcript|length=1548bp|location=Sequence derived from alignment at sc0006680:1..1548- (Clytia hemisphaerica)
AATTTATCAATCACGTTTTCAAAATGTTCTTATTTTTCGTTGCGCTGTCG
TTTCCTACCATCAAGAGGAAACGAACTCCCCGGCAGTTATTATTCACCGA
AGAGATAACCCATCGATCGTGGATCGCGGCCGTCATCATTTTGGCTAGTG
CTTCCTTGGGATGGGTTGCCACCTCGGAAATCCTATAATAAGGAAGACAA
CATCGAACGTAAGTGGAAAAATTCTATATTAATTTACAATCAAATATTAA
NNNNNNNNNNNNNNNNNNATCATTTTGGCCAGTGCTTCCTTGGGATGGGT
TGCCACCTCGGAAATCCTATAATAAGGAAGACAACATCGAACGTAAGTGG
AAAAATTCTATATTAATTTACAATCAAATATTAAATATTAAAACGTCCTA
AAGTTCTCTGATACCAGATCATTGAACCAAATAAATAAAATACTACAAAA
AAAAATTTTAATCGACAAATTCTAATCAAATTTTATATACAAATCTTCAT
TTTATGATTCACTAATAACATTCTTGTTACAGTTCCTGATGGTTTTTCTT
CATTACTTTTCAGGGAATAAACTGAAGAACAACCCCGTAAGTCCGTCCGA
GCGTTGGGCTCAGATTAAAGCTGAGCAAGAAGAGCCTGATTGGGATGACG
AATTGAATTGTTCGGAATTGTCGGATTCAGCCGAAGTGATTGAGTAGCTC
GGTAAGTTTTCATTTGTTTGCAATACTTCCGGCCATTGCTCATGTACGGG
AGCTCCTCGTTGCAGTGGTTGAGGCGGTTTCTCATATCTCCACACCGTAA
ACGCTCCGAATTTTTCTTTCCTCAATCCCATTCGACGAAGATAATCAGCT
CTGTATTCTTCTGTTGTCAAACGTATTAAGATATCTAGTCGGCGGTCTTC
TTCCCTGATATTGCTTGCTTCTTTGGGTGATCTTCTTTTAAGTCTTGTCA
AGATTATCTCACTGTGCATCCTTCCAAAATACGAAAGAATAAGTTGGGGT
TTTGTGTTTATTATATCCCTTTGCAGTTCGATACAGGGTGCTATCNNNNN
TTCTTTTAAGTCTTGTCAAGATTATCTCACTGTGCATCCTTCCAAAATAC
GAAAGAATAAGTTGGGGTTTTGTGTTTATTATATCCCTTTGCAGTTCGAT
ACAGGGTGCTATCTTCAGCTGTATAAATTGAAAGCGAATTCTTGTGATTG
TGTCTTGATTGATCGCTCACCATGAGGACGACTCGTATTTTCTTTAACAG
CATGGCCTGTTGCTTCTGTGACATAATTTTATCCATCTTGATTTCTAGAT
TCACTCGTCCTGTCGCCAGAAGTAATTGAAAGCTGAGCGTGGACAATCGC
AGCACCATCTTGTCAACCATCAGAATGTTGAACCGTGAAATATAATGATT
TTTTGTTTCTTTTATACACCTCACAAAAATTTCGTTTGTTATTTCCTTTC
CTCCACAGCTTCCTTTGTTTCGTCACAATACATATAGTACAAACTTTTGC
GGTACTTCGGTTACCATGATTGCAACTCTTTTAAAATTAATGAGTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045015-exon-sc0006680-1575043694:1..1548 | TCONS_00045015-exon-sc0006680-1575043694:1..1548 | Clytia hemisphaerica | exon |
| TCONS_00045015-exon-sc0006680-1510915933:1..1548 | TCONS_00045015-exon-sc0006680-1510915933:1..1548 | Clytia hemisphaerica | exon |
| TCONS_00045015-exon-sc0006680-1491911889:1..1548 | TCONS_00045015-exon-sc0006680-1491911889:1..1548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006680 | supercontig | sc0006680:1..1548 - |
Blast
The following BLAST results are available for this feature:
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