TCONS_00045014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045014
Unique NameTCONS_00045014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1180

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045014 ID=TCONS_00045014|Name=TCONS_00045014|organism=Clytia hemisphaerica|type=transcript|length=1180bp
GTGCTTCCTTGGGATGGGTTGCCACCTCGGAAATCCTATAATAAGGAAGA
CAACATCGAACGTAAGTGGAAAAATTCTATATTAATTTACAATCAAATAT
TAANNNNNNNNNNNNNNNNNNATCATTTTGGCCAGTGCTTCCTTGGGATG
GGTTGCCACCTCGGAAATCCTATAATAAGGAAGACAACATCGAACGGAAT
AAACTGAAGAACAACCCCGTAAGTCCGTCCGAGCGTTGGGCTCAGATTAA
AGCTGAGCAAGAAGAGCCTGATTGGGATGACGAATTGAATTGTTCGGAAT
TGTCGGATTCAGCCGAAGTGATTGAGTAGCTCGGTAAGTTTTCATTTGTT
TGCAATACTTCCGGCCATTGCTCATGTACGGGAGCTCCTCGTTGCAGTGG
TTGAGGCGGTTTCTCATATCTCCACACCGTAAACGCTCCgaatttttctt
tcctcaaTCCCATTCGACGAAGATAATCAGCTCTGTATTCTTCTGTTGTC
AAACGTATTAAGATATCTAGTCGGCGGTCTTCTTCCCTGATATTGCTTGC
TTCTTTGGGTGATCTTCTTTTAAGTCTTGTCAAGATTATCTCACTGTGCA
TCCTTCCAAAATACGAAAGAATAAGTTGGGGTTTTGTGTTTATTATATCC
CTTTGCAGTTCGATACAGGGTGCTATCNNNNNTTCTTTTAAGTCTTGTCA
AGATTATCTCACTGTGCATCCTTCCAAAATACGAAAGAATAAGTTGGGGT
TTTGTGTTTATTATATCCCTTTGCAGTTCGATACAGGGTGCTATCTTCAG
CTGTATAAATTGAAAGCGAATTCTTGTGATTGTGTCTTGATTGATCGCTC
ACCATGAGGACGACTCGTATTTTCTTTAACAGCATGGCCTGTTGCTTCTG
TGACATAATTTTATCCATCTTGATTTCTAGATTCACTCGTCCTGTCGCCA
GAAGTAATTGAAAGCTGAGCGTGGACAATCGCAGCACCATCTTGTCAACC
ATCAGAATGTTGAACCGTGAAATATaatgattttttgtttcttttatacA
CCTCACAAAAATTTCGTTTGTTATTTCCTTTCCTCCACAGCTTCCTTTGT
TTCGTCACAATACATATAGTACAAACTTTTGCGGTACTTCGGTTACCATG
ATTGCAACTCTTTTAAAATTAATGAGTCTT
Run BLAST on NCBI

transcript from alignment at sc0006680:1..1401-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045014 ID=TCONS_00045014|Name=TCONS_00045014|organism=Clytia hemisphaerica|type=transcript|length=1401bp|location=Sequence derived from alignment at sc0006680:1..1401- (Clytia hemisphaerica)
GTGCTTCCTTGGGATGGGTTGCCACCTCGGAAATCCTATAATAAGGAAGA
CAACATCGAACGTAAGTGGAAAAATTCTATATTAATTTACAATCAAATAT
TAANNNNNNNNNNNNNNNNNNATCATTTTGGCCAGTGCTTCCTTGGGATG
GGTTGCCACCTCGGAAATCCTATAATAAGGAAGACAACATCGAACGTAAG
TGGAAAAATTCTATATTAATTTACAATCAAATATTAAATATTAAAACGTC
CTAAAGTTCTCTGATACCAGATCATTGAACCAAATAAATAAAATACTACA
AAAAAAAATTTTAATCGACAAATTCTAATCAAATTTTATATACAAATCTT
CATTTTATGATTCACTAATAACATTCTTGTTACAGTTCCTGATGGTTTTT
CTTCATTACTTTTCAGGGAATAAACTGAAGAACAACCCCGTAAGTCCGTC
CGAGCGTTGGGCTCAGATTAAAGCTGAGCAAGAAGAGCCTGATTGGGATG
ACGAATTGAATTGTTCGGAATTGTCGGATTCAGCCGAAGTGATTGAGTAG
CTCGGTAAGTTTTCATTTGTTTGCAATACTTCCGGCCATTGCTCATGTAC
GGGAGCTCCTCGTTGCAGTGGTTGAGGCGGTTTCTCATATCTCCACACCG
TAAACGCTCCGAATTTTTCTTTCCTCAATCCCATTCGACGAAGATAATCA
GCTCTGTATTCTTCTGTTGTCAAACGTATTAAGATATCTAGTCGGCGGTC
TTCTTCCCTGATATTGCTTGCTTCTTTGGGTGATCTTCTTTTAAGTCTTG
TCAAGATTATCTCACTGTGCATCCTTCCAAAATACGAAAGAATAAGTTGG
GGTTTTGTGTTTATTATATCCCTTTGCAGTTCGATACAGGGTGCTATCNN
NNNTTCTTTTAAGTCTTGTCAAGATTATCTCACTGTGCATCCTTCCAAAA
TACGAAAGAATAAGTTGGGGTTTTGTGTTTATTATATCCCTTTGCAGTTC
GATACAGGGTGCTATCTTCAGCTGTATAAATTGAAAGCGAATTCTTGTGA
TTGTGTCTTGATTGATCGCTCACCATGAGGACGACTCGTATTTTCTTTAA
CAGCATGGCCTGTTGCTTCTGTGACATAATTTTATCCATCTTGATTTCTA
GATTCACTCGTCCTGTCGCCAGAAGTAATTGAAAGCTGAGCGTGGACAAT
CGCAGCACCATCTTGTCAACCATCAGAATGTTGAACCGTGAAATATAATG
ATTTTTTGTTTCTTTTATACACCTCACAAAAATTTCGTTTGTTATTTCCT
TTCCTCCACAGCTTCCTTTGTTTCGTCACAATACATATAGTACAAACTTT
TGCGGTACTTCGGTTACCATGATTGCAACTCTTTTAAAATTAATGAGTCT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028603XLOC_028603Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045014-exon-sc0006680-1575043694:1207..1401TCONS_00045014-exon-sc0006680-1575043694:1207..1401Clytia hemisphaericaexon
TCONS_00045014-exon-sc0006680-1575043694:1..985TCONS_00045014-exon-sc0006680-1575043694:1..985Clytia hemisphaericaexon
TCONS_00045014-exon-sc0006680-1510915933:1207..1401TCONS_00045014-exon-sc0006680-1510915933:1207..1401Clytia hemisphaericaexon
TCONS_00045014-exon-sc0006680-1510915933:1..985TCONS_00045014-exon-sc0006680-1510915933:1..985Clytia hemisphaericaexon
TCONS_00045014-exon-sc0006680-1491911889:1207..1401TCONS_00045014-exon-sc0006680-1491911889:1207..1401Clytia hemisphaericaexon
TCONS_00045014-exon-sc0006680-1491911889:1..985TCONS_00045014-exon-sc0006680-1491911889:1..985Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006680supercontigsc0006680:1..1401 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.150525	0.598911	0.0632275	0.11177	0	0	0	0	0	0	1.51011e-09	0	1.12961	0.876509	0.830885	1.54352	0	1.94894	1.48692	0.746032	2.55415e-06	0.743798	0	3.28844	0	0.812476	0	0.119763
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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