|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044991 ID=TCONS_00044991|Name=TCONS_00044991|organism=Clytia hemisphaerica|type=transcript|length=753bp
CCCCCACAAATACGATCGtctataaaaattatacttttaaTCCCTTCTGA
TCTCCATTTTTTAATAAACGGTctcaatatttttgtaaaaatgtagCATG
CCGAGCTTAGTCCGAATGGCAAGACATTAAATATGAAATACTTAGTTTGT
CCGTCAGGAAAGAACCAGTGAAAacctaaatattttttatgttcaGGATG
AATATCAACATGGTGGTATCCAGAGGTTAAGTCGAAAGTGATAAAGAAAT
CGTCTTGGTCGAAAAGCTCTGCAAAAGTTTTCAGATCTTCGTATTTGAAT
TTTTGGTTATCAACAAATTGGTTAACGTGACGCAAGTCTAGTACCAAACG
TAACTTGGAATTTCTTTCTGCAACTGTTAATGGATTACAACACTTGGGGA
TATCGGAAACTTCAGAAATACATCCTTTTGACAATAGCGATTTGATTGCG
TCTTGGACGAAATTTGAATTATCGAGACTGGACTtgttatttttggcaaa
aaatgcaGGTGGAACACTCTTAAATGGAATCAAATAGCCTTCGTCaataa
tcttttgaaaaaaatttgaaacgtgtaaattatttttccaaaaatttgaa
catGTCTTTAGACGACCAAATACTGAAATTTCgttacatttttctttaaa
atcgtAATCCCTAGTGTCCTTTATTGAGGTCTGATCTTTTGACTGGGCAG
TTGTACTGAAAGTGTCCTTCCTTCCCACAGTAATAACATGATCTGTCTTT
GGN Run BLAST on NCBI protein sequence of TCONS_00044991-protein >TCONS_00044991-protein ID=TCONS_00044991-protein|Name=TCONS_00044991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
PKTDHVITVGRKDTFSTTAQSKDQTSIKDTRDYDFKEKCNEISVFGRLKT
CSNFWKNNLHVSNFFQKIIDEGYLIPFKSVPPAFFAKNNKSSLDNSNFVQ
DAIKSLLSKGCISEVSDIPKCCNPLTVAERNSKLRLVLDLRHVNQFVDNQ
KFKYEDLKTFAELFDQDDFFITFDLTSGYHHVDIHPEHKKYLGFHWFFPD
GQTKYFIFNVLPFGLSSACYIFTKILRPFIKKWRSEGIKSIIFIDDRICG Run BLAST on NCBI transcript from alignment at sc0006625:734..1486 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044991 ID=TCONS_00044991|Name=TCONS_00044991|organism=Clytia hemisphaerica|type=transcript|length=753bp|location=Sequence derived from alignment at sc0006625:734..1486 (Clytia hemisphaerica)
NCCAAAGACAGATCATGTTATTACTGTGGGAAGGAAGGACACTTTCAGTA
CAACTGCCCAGTCAAAAGATCAGACCTCAATAAAGGACACTAGGGATTac
gattttaaagaaaaatgtaacGAAATTTCAGTATTTGGTCGTCTAAAGAC
atgttcaaatttttggaaaaataatttacacgtttcaaatttttttcaaa
agattattGACGAAGGCTATTTGATTCCATTTAAGAGTGTTCCACCtgca
ttttttgccaaaaataacaAGTCCAGTCTCGATAATTCAAATTTCGTCCA
AGACGCAATCAAATCGCTATTGTCAAAAGGATGTATTTCTGAAGTTTCCG
ATATCCCCAAGTGTTGTAATCCATTAACAGTTGCAGAAAGAAATTCCAAG
TTACGTTTGGTACTAGACTTGCGTCACGTTAACCAATTTGTTGATAACCA
AAAATTCAAATACGAAGATCTGAAAACTTTTGCAGAGCTTTTCGACCAAG
ACGATTTCTTTATCACTTTCGACTTAACCTCTGGATACCACCATGTTGAT
ATTCATCCtgaacataaaaaatatttaggtTTTCACTGGTTCTTTCCTGA
CGGACAAACTAAGTATTTCATATTTAATGTCTTGCCATTCGGACTAAGCT
CGGCATGctacatttttacaaaaatattgagACCGTTTATTAAAAAATGG
AGATCAGAAGGGAttaaaagtataatttttatagaCGATCGTATTTGTGG
GGG Coding sequence (CDS) from alignment at sc0006625:734..1486 >TCONS_00044991 ID=TCONS_00044991|Name=TCONS_00044991|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at sc0006625:734..1486 (Clytia hemisphaerica)
CCAAAGACAGATCATGTTATTACTGTGGGAAGGAAGGACACTTTCAGTAC
AACTGCCCAGTCAAAAGATCAGACCTCAATAAAGGACACTAGGGATTacg
attttaaagaaaaatgtaacGAAATTTCAGTATTTGGTCGTCTAAAGACa
tgttcaaatttttggaaaaataatttacacgtttcaaatttttttcaaaa
gattattGACGAAGGCTATTTGATTCCATTTAAGAGTGTTCCACCtgcat
tttttgccaaaaataacaAGTCCAGTCTCGATAATTCAAATTTCGTCCAA
GACGCAATCAAATCGCTATTGTCAAAAGGATGTATTTCTGAAGTTTCCGA
TATCCCCAAGTGTTGTAATCCATTAACAGTTGCAGAAAGAAATTCCAAGT
TACGTTTGGTACTAGACTTGCGTCACGTTAACCAATTTGTTGATAACCAA
AAATTCAAATACGAAGATCTGAAAACTTTTGCAGAGCTTTTCGACCAAGA
CGATTTCTTTATCACTTTCGACTTAACCTCTGGATACCACCATGTTGATA
TTCATCCtgaacataaaaaatatttaggtTTTCACTGGTTCTTTCCTGAC
GGACAAACTAAGTATTTCATATTTAATGTCTTGCCATTCGGACTAAGCTC
GGCATGctacatttttacaaaaatattgagACCGTTTATTAAAAAATGGA
GATCAGAAGGGAttaaaagtataatttttatagaCGATCGTATTTGTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044991-exon-sc0006625-1491911889:734..1486 | TCONS_00044991-exon-sc0006625-1491911889:734..1486 | Clytia hemisphaerica | exon |
| TCONS_00044991-exon-sc0006625-1510915933:734..1486 | TCONS_00044991-exon-sc0006625-1510915933:734..1486 | Clytia hemisphaerica | exon |
| TCONS_00044991-exon-sc0006625-1575043694:734..1486 | TCONS_00044991-exon-sc0006625-1575043694:734..1486 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006625 | supercontig | sc0006625:734..1486 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
