TCONS_00044986 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044986
Unique NameTCONS_00044986
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044986 ID=TCONS_00044986|Name=TCONS_00044986|organism=Clytia hemisphaerica|type=transcript|length=228bp
CTCTCTAACATTACGAGAGACATGTTTTTTTCTAataattctaatttttt
tcaaatttatttttagctGAGAGAAGGAACAACAGAAGTTAAGCTTGAAG
AGAGAAACGAGCAGAACAAATATGGTGTCAATTTCACAATGTGTAAAAAC
ATTCCAAAGGTTGATGAATCGAGAATAGTTATAAATCAAGTCGATCCAAC
ATTGGTCAGAGATGAAAGTGTTTGGTAA
Run BLAST on NCBI

transcript from alignment at sc0006602:15..1062-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044986 ID=TCONS_00044986|Name=TCONS_00044986|organism=Clytia hemisphaerica|type=transcript|length=1048bp|location=Sequence derived from alignment at sc0006602:15..1062- (Clytia hemisphaerica)
CTCTCTAACATTACGAGAGACATGTTTTTTTCTAATAATTCTAATTTTTT
TCAAATTTATTTTTAGCTGAGAGAAGGAACAACAGAAGTTAAGCTTGAAG
AGGTAAGTAATCACAGCCCAGCTGGCACACAACGTTGTTTCAACGTTAAT
TTAATGTTCACAACGTCCATTTAACTTTAGATGAACGTTAAAACAACGTT
GTGGCAACTGACACAAACAGTTAAAATGTTTGGACACAGTTTTAGCGGTT
AAAGGTTTTATTTTTACATAAGTGTTCCCGTTTCATATCAGACACATATT
TCATATCTGGACAATGTCTGATTATCGTTATAACGGTAAATATTATGCTG
ATATAAGAAAAAAGATTTTTCTTTTCCTTTTTCTGATCAAAGTTTTGCTC
TGACACATCCGTGTCAATCCAATGTAAAAAAGCTTGTAAGTTAAAATTGA
TGAGTAAGCAAATGATACCAGTCTCATTTAAAACAAAACCTTTAAATATT
TTTTGTGTTTTTTTGTTTTTGTTTATGCTGAAAAGAACCTTTGCCTCATA
GAAAAAGCCTTGAAGGCCTTGAATGGGCTTTTTCAGAAAAATCTTACCCC
CATTGTTGAGGATATTGATTTTTCGAAGTATCGAACCCCCTGGATATCAT
ACTGTATCAGTAAATCCACTTTTAAAAACATACTTACCCCTGGATATCCT
CTCTTATGAAGATGCTTACCCCCATATATCGTATTTTTTACTTGAAAAGA
TACTTTACCTCTGGATATCCGCTCCCTTGTAGATATTTAACCACCTGGAT
ATCCACTTTTGAACAAATATCGTTAACCTCCTGGATATCCGATATCCTCA
ACAGGGGGGACACCGAGAATTACTGGAAAAGCCGTCCAATGTATTTTCCC
TATATTGCTTGCATTTTTTCAGAGAAACGAGCAGAACAAATATGGTGTCA
ATTTCACAATGTGTAAAAACATTCCAAAGGTTGATGAATCGAGAATAGTT
ATAAATCAAGTCGATCCAACATTGGTCAGAGATGAAAGTGTTTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028577XLOC_028577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044986-exon-sc0006602-1575043694:961..1062TCONS_00044986-exon-sc0006602-1575043694:961..1062Clytia hemisphaericaexon
TCONS_00044986-exon-sc0006602-1575043694:15..140TCONS_00044986-exon-sc0006602-1575043694:15..140Clytia hemisphaericaexon
TCONS_00044986-exon-sc0006602-1510915933:961..1062TCONS_00044986-exon-sc0006602-1510915933:961..1062Clytia hemisphaericaexon
TCONS_00044986-exon-sc0006602-1510915933:15..140TCONS_00044986-exon-sc0006602-1510915933:15..140Clytia hemisphaericaexon
TCONS_00044986-exon-sc0006602-1491911889:961..1062TCONS_00044986-exon-sc0006602-1491911889:961..1062Clytia hemisphaericaexon
TCONS_00044986-exon-sc0006602-1491911889:15..140TCONS_00044986-exon-sc0006602-1491911889:15..140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006602supercontigsc0006602:15..1062 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.06344	3.70425	2.41602	1.47064	2.32423	1.40205	9.18804	0.918967	5.69144	0	2.90514	15.2308	8.28526	6.81161	1.32907	1.63731	5.03457	10.4333	8.49154	8.43507	7.71437	3.75113	7.95742	1.17085	6.26974	2.99066	3.19171	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044986 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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