TCONS_00044982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044982
Unique NameTCONS_00044982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044982 ID=TCONS_00044982|Name=TCONS_00044982|organism=Clytia hemisphaerica|type=transcript|length=500bp
attgcatattcgtcagattgtatgttttcacccatccctttagagcttca
gcgtggtgggcagaaaacaatcacaatctgatctcaggtaagagagcgtc
aactgtatatgaAGACTAGAGATTGAAATAAAACTTACGTTTATGAAATG
TTCGAATGTTGTGTGCTCGTAATTCCTCTCGTCAAACGCGGCTTTGGATA
ATTTGATAAACAAAGCATTCCCCGTTCCGTAAATTACACTACCGGCTGCA
TTAGGTTTGGTCAGAGAATCAAATACTGTGGTAATATGCGGAACGGTTCC
TTCGCagtgatatttgaaaaaatcatataAAGGATGTTGGGTACTCAGAT
GACGTCGGAAGGATAAACAATAAACGGTTGCCACAAAATGAACACCTCCC
AAATGAAGTTTTGCTTGGCAGTACAGATCAGAACACATCTCTGCTTCTCC
TTTGGCCAACAACCAGCTTGAATCTCCGggaacaagaactttttgtgCTA
Run BLAST on NCBI

protein sequence of TCONS_00044982-protein

>TCONS_00044982-protein ID=TCONS_00044982-protein|Name=TCONS_00044982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
AQKVLVPGDSSWLLAKGEAEMCSDLYCQAKLHLGGVHFVATVYCLSFRRH
LSTQHPLYDFFKYHCEGTVPHITTVFDSLTKPNAAGSVIYGTGNALFIKL
SKAAFDERNYEHTTFEHFINVSFISISSLHIQLTLSYLRSDCDCFLPTTL
KL
Run BLAST on NCBI

transcript from alignment at sc0006596:182..681

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044982 ID=TCONS_00044982|Name=TCONS_00044982|organism=Clytia hemisphaerica|type=transcript|length=500bp|location=Sequence derived from alignment at sc0006596:182..681 (Clytia hemisphaerica)
TAGcacaaaaagttcttgttccCGGAGATTCAAGCTGGTTGTTGGCCAAA
GGAGAAGCAGAGATGTGTTCTGATCTGTACTGCCAAGCAAAACTTCATTT
GGGAGGTGTTCATTTTGTGGCAACCGTTTATTGTTTATCCTTCCGACGTC
ATCTGAGTACCCAACATCCTTtatatgattttttcaaatatcactGCGAA
GGAACCGTTCCGCATATTACCACAGTATTTGATTCTCTGACCAAACCTAA
TGCAGCCGGTAGTGTAATTTACGGAACGGGGAATGCTTTGTTTATCAAAT
TATCCAAAGCCGCGTTTGACGAGAGGAATTACGAGCACACAACATTCGAA
CATTTCATAAACGTAAGTTTTATTTCAATCTCTAGTCTtcatatacagtt
gacgctctcttacctgagatcagattgtgattgttttctgcccaccacgc
tgaagctctaaagggatgggtgaaaacatacaatctgacgaatatgcaat

Coding sequence (CDS) from alignment at sc0006596:182..681

>TCONS_00044982 ID=TCONS_00044982|Name=TCONS_00044982|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0006596:182..681 (Clytia hemisphaerica)
GcacaaaaagttcttgttccCGGAGATTCAAGCTGGTTGTTGGCCAAAGG
AGAAGCAGAGATGTGTTCTGATCTGTACTGCCAAGCAAAACTTCATTTGG
GAGGTGTTCATTTTGTGGCAACCGTTTATTGTTTATCCTTCCGACGTCAT
CTGAGTACCCAACATCCTTtatatgattttttcaaatatcactGCGAAGG
AACCGTTCCGCATATTACCACAGTATTTGATTCTCTGACCAAACCTAATG
CAGCCGGTAGTGTAATTTACGGAACGGGGAATGCTTTGTTTATCAAATTA
TCCAAAGCCGCGTTTGACGAGAGGAATTACGAGCACACAACATTCGAACA
TTTCATAAACGTAAGTTTTATTTCAATCTCTAGTCTtcatatacagttga
cgctctcttacctgagatcagattgtgattgttttctgcccaccacgctg
aagctctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028573XLOC_028573Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044982-proteinTCONS_00044982-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044982-exon-sc0006596-1491911889:182..681TCONS_00044982-exon-sc0006596-1491911889:182..681Clytia hemisphaericaexon
TCONS_00044982-exon-sc0006596-1510915933:182..681TCONS_00044982-exon-sc0006596-1510915933:182..681Clytia hemisphaericaexon
TCONS_00044982-exon-sc0006596-1575043694:182..681TCONS_00044982-exon-sc0006596-1575043694:182..681Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006596supercontigsc0006596:182..681 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.165578	0.250723	0.378612	0	0.134823	103.87	111.612	639.705	339.537	647.633	669.242	46.4973	44.1019	177.666	235.838	4.65103	5.40456	7.43042	4.5483	0.146538	0.407327	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013819LipOase_C
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top