TCONS_00044977 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044977
Unique NameTCONS_00044977
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044977 ID=TCONS_00044977|Name=TCONS_00044977|organism=Clytia hemisphaerica|type=transcript|length=424bp
CGGAGCTGGGCGATCAAGAGGCGGTTTTAGAGGACGAGGGCGTGGAAGAG
GTGGTCGATGGTAAACGCATTTTCAATGATCAGCATTTACGTTATGATGG
TGGTGCAAACGAAGAATTATTTGTTTGGGATCGAGGAATTTGGCGAGATA
TACTATTTAACTTTCAGGGTATTTGAAGCAGAGCTGGTGACGATATGATT
GTCACGTGTACTAAAAAGATTATGAACCGGATTCGATATCAAACGATAAA
ACAATACCTTCCATAGTAATTTATACCTCGAAAATAAATGAAAGATGACG
ATAGGATGGCGAAAAAAACTCTTAAACAATACAATAGAACTGTGTTTTTA
AAATGTGTATTATGGATTTTAATAAAGATAAGATATTTTTTCAAGGAAAT
AACTagaattcaaagtaaaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0006587:1263..1686

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044977 ID=TCONS_00044977|Name=TCONS_00044977|organism=Clytia hemisphaerica|type=transcript|length=424bp|location=Sequence derived from alignment at sc0006587:1263..1686 (Clytia hemisphaerica)
ttttttttactttgaattctAGTTATTTCCTTGAAAAAATATCTTATCTT
TATTAAAATCCATAATACACATTTTAAAAACACAGTTCTATTGTATTGTT
TAAGAGTTTTTTTCGCCATCCTATCGTCATCTTTCATTTATTTTCGAGGT
ATAAATTACTATGGAAGGTATTGTTTTATCGTTTGATATCGAATCCGGTT
CATAATCTTTTTAGTACACGTGACAATCATATCGTCACCAGCTCTGCTTC
AAATACCCTGAAAGTTAAATAGTATATCTCGCCAAATTCCTCGATCCCAA
ACAAATAATTCTTCGTTTGCACCACCATCATAACGTAAATGCTGATCATT
GAAAATGCGTTTACCATCGACCACCTCTTCCACGCCCTCGTCCTCTAAAA
CCGCCTCTTGATCGCCCAGCTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028568XLOC_028568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044977-exon-sc0006587-1491911889:1263..1686TCONS_00044977-exon-sc0006587-1491911889:1263..1686Clytia hemisphaericaexon
TCONS_00044977-exon-sc0006587-1510915933:1263..1686TCONS_00044977-exon-sc0006587-1510915933:1263..1686Clytia hemisphaericaexon
TCONS_00044977-exon-sc0006587-1575043694:1263..1686TCONS_00044977-exon-sc0006587-1575043694:1263..1686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006587supercontigsc0006587:1263..1686 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.26079	7.63291	10.3427	13.4728	9.57816	6.44986	9.37166	9.07881	5.66905	5.31076	4.36065	3.27676	3.24777	3.26889	3.86918	4.2166	3.49424	5.37716	0	1.79703	4.35058	5.72338	8.64355	6.10298	11.3185	16.5317	3.56545	3.14837	4.7587	5.87644
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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