TCONS_00044975 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044975
Unique NameTCONS_00044975
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044975 ID=TCONS_00044975|Name=TCONS_00044975|organism=Clytia hemisphaerica|type=transcript|length=615bp
ATTACTTGTTTTAGGTTGTCCTATAGTTGTAATCACTTCCTCGACAATTT
CCTCAACAACATATTGGGTAGTGGCGCCAGCCATAGACCCAGACACCGGC
CTTCCATCTTCAGTGTAATATTCTTCAATGATGACATCGCCAGGCTGcat
ttcgatgacgtcatcgtcacCTAGCCCGTGTTCTTCCATGTAAACTTCTT
CAACAAGATCAGAATCATCATCCTCGTCATCATCGTCTCCAACACTGCTT
ATGGTGTATTCATTTATCCCTCTAGTGATCTTCTGTAGGTAGCGATCTTC
AGTCGTTATGCCACCACCCTGTCTGTGTAACATCCCTTCAAAACTATCCA
ACACGGCCGATCCTTCTGACTCGTTGTCCGATACGGAGAAATTGTACTCC
TTGACCTTACCACCGGAAAAGAAGCGGACATCTCGGTCATCATCCTGCTG
TAGAGATTCTAGTGTGTGATCAACTGATTTCCGTACTTCATCATCTTCCG
GTAGGCTTTGAAAGTGCTctgaaaattagaaataaaaaaggCTAAGTCGC
GATATATGGTGTGTCTGAAACTGCCGTTCTTTTTCACGTCATTCTGAAAA
GGACTGTTGTGCGTT
Run BLAST on NCBI

protein sequence of TCONS_00044975-protein

>TCONS_00044975-protein ID=TCONS_00044975-protein|Name=TCONS_00044975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MLHRQGGGITTEDRYLQKITRGINEYTISSVGDDDDEDDDSDLVEEVYME
EHGLGDDDVIEMQPGDVIIEEYYTEDGRPVSGSMAGATTQYVVEEIVEEV
ITTIGQPKTSN
Run BLAST on NCBI

transcript from alignment at sc0006578:1089..1703

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044975 ID=TCONS_00044975|Name=TCONS_00044975|organism=Clytia hemisphaerica|type=transcript|length=615bp|location=Sequence derived from alignment at sc0006578:1089..1703 (Clytia hemisphaerica)
AACGCACAACAGTCCTTTTCAGAATGACGTGAAAAAGAACGGCAGTTTCA
GACACACCATATATCGCGACTTAGccttttttatttctaattttcagAGC
ACTTTCAAAGCCTACCGGAAGATGATGAAGTACGGAAATCAGTTGATCAC
ACACTAGAATCTCTACAGCAGGATGATGACCGAGATGTCCGCTTCTTTTC
CGGTGGTAAGGTCAAGGAGTACAATTTCTCCGTATCGGACAACGAGTCAG
AAGGATCGGCCGTGTTGGATAGTTTTGAAGGGATGTTACACAGACAGGGT
GGTGGCATAACGACTGAAGATCGCTACCTACAGAAGATCACTAGAGGGAT
AAATGAATACACCATAAGCAGTGTTGGAGACGATGATGACGAGGATGATG
ATTCTGATCTTGTTGAAGAAGTTTACATGGAAGAACACGGGCTAGgtgac
gatgacgtcatcgaaatgCAGCCTGGCGATGTCATCATTGAAGAATATTA
CACTGAAGATGGAAGGCCGGTGTCTGGGTCTATGGCTGGCGCCACTACCC
AATATGTTGTTGAGGAAATTGTCGAGGAAGTGATTACAACTATAGGACAA
CCTAAAACAAGTAAT

Coding sequence (CDS) from alignment at sc0006578:1089..1703

>TCONS_00044975 ID=TCONS_00044975|Name=TCONS_00044975|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0006578:1089..1703 (Clytia hemisphaerica)
ATGTTACACAGACAGGGTGGTGGCATAACGACTGAAGATCGCTACCTACA
GAAGATCACTAGAGGGATAAATGAATACACCATAAGCAGTGTTGGAGACG
ATGATGACGAGGATGATGATTCTGATCTTGTTGAAGAAGTTTACATGGAA
GAACACGGGCTAGgtgacgatgacgtcatcgaaatgCAGCCTGGCGATGT
CATCATTGAAGAATATTACACTGAAGATGGAAGGCCGGTGTCTGGGTCTA
TGGCTGGCGCCACTACCCAATATGTTGTTGAGGAAATTGTCGAGGAAGTG
ATTACAACTATAGGACAACCTAAAACAAGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028566XLOC_028566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044975-exon-sc0006578-1491911889:1089..1703TCONS_00044975-exon-sc0006578-1491911889:1089..1703Clytia hemisphaericaexon
TCONS_00044975-exon-sc0006578-1510915933:1089..1703TCONS_00044975-exon-sc0006578-1510915933:1089..1703Clytia hemisphaericaexon
TCONS_00044975-exon-sc0006578-1575043694:1089..1703TCONS_00044975-exon-sc0006578-1575043694:1089..1703Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044975-proteinTCONS_00044975-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006578supercontigsc0006578:1089..1703 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.3898	24.1152	19.4912	24.1026	173.934	138.004	124.254	135.047	68.1874	87.1062	47.8069	44.2879	47.8295	47.1969	50.8102	53.1426	96.8234	71.674	32.8833	50.157	52.6357	52.1719	65.626	65.8576	108.737	101.986	60.6291	55.7537	59.9392	64.2307
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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