TCONS_00044967 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044967
Unique NameTCONS_00044967
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length854

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044967 ID=TCONS_00044967|Name=TCONS_00044967|organism=Clytia hemisphaerica|type=transcript|length=854bp
aaaaagtatacGCGTGGGAAAAAGAAGGAGTGAAAATCAAAACACGCTCT
TTCGCAGTGATTTGTTTCGATAAATGGTAATCTCCACGATACGATTTAAA
ATTAATGCAAACCCCCGTGATACTTAGAAGTTTCCATGGATACGAAAAGG
TAAACACCGAAAGCTGAATTCGCCAAACGCTCCTAAGATTAAAATTGGTT
CCGactgcatttaaaaaaaaattgttttgaatgtTCTCCGCCACGGTGAA
TTAGAACTCAAAAAACCTGAACGGGGaagatttcgaatgtttttattatg
TTTTGTCTTGATGTTTCAAGATCATTATTCTAAGAGAATCGTTAAGTTGA
CAAGTAGGCGAGACAAACGTCGTTTTAAAATGGCGGGCAAAATTTGATTT
GTAAATCCTGTAATGGTGGTTCCAGAGCTGACAAAGTGTCAAGAAGGAGT
AATCAGATACATATTCAGATTTATTTTTGCAAGGTTTGGAGGATTTTAAG
GAAAACAGAATGATCGTCCTAGAAGTATGTATGATTAGACTAGATATTAA
CCTGGCTAGCAACAGACACAACAGtcagtgttttttcaaaaactgtatgg
aGTCTtgtaggaccctgccgacgcaccggacttaacgaacaccggacacg
cgaaagtccggtgtaaaatgaaaattttttttaccaccggacaatttcta
caccggacttaaggaagtcggatgtccggtgtcagagaaagatatttttt
cccaccggacaatcaaaacaccggacatgaccagtcctgtgtgtccggtg
tttcttattttttgtttcataaatgtccggcgtccaaaattctctgtatg
caac
Run BLAST on NCBI

transcript from alignment at sc0006570:462..1315

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044967 ID=TCONS_00044967|Name=TCONS_00044967|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at sc0006570:462..1315 (Clytia hemisphaerica)
gttgcatacagagaattttggacgccggacatttatgaaacaaaaaataa
gaaacaccggacacacaggactggtcatgtccggtgttttgattgtccgg
tgggaaaaaatatctttctctgacaccggacatccgacttccttaagtcc
ggtgtagaaattgtccggtggtaaaaaaaattttcattttacaccggact
ttcgcgtgtccggtgttcgttaagtccggtgcgtcggcagggtcctacaA
GACtccatacagtttttgaaaaaacactgaCTGTTGTGTCTGTTGCTAGC
CAGGTTAATATCTAGTCTAATCATACATACTTCTAGGACGATCATTCTGT
TTTCCTTAAAATCCTCCAAACCTTGCAAAAATAAATCTGAATATGTATCT
GATTACTCCTTCTTGACACTTTGTCAGCTCTGGAACCACCATTACAGGAT
TTACAAATCAAATTTTGCCCGCCATTTTAAAACGACGTTTGTCTCGCCTA
CTTGTCAACTTAACGATTCTCTTAGAATAATGATCTTGAAACATCAAGAC
AAAAcataataaaaacattcgaaatcttCCCCGTTCAGGTTTTTTGAGTT
CTAATTCACCGTGGCGGAGAacattcaaaacaatttttttttaaatgcag
tCGGAACCAATTTTAATCTTAGGAGCGTTTGGCGAATTCAGCTTTCGGTG
TTTACCTTTTCGTATCCATGGAAACTTCTAAGTATCACGGGGGTTTGCAT
TAATTTTAAATCGTATCGTGGAGATTACCATTTATCGAAACAAATCACTG
CGAAAGAGCGTGTTTTGATTTTCACTCCTTCTTTTTCCCACGCgtatact
tttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028558XLOC_028558Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044967-exon-sc0006570-1491911889:462..1315TCONS_00044967-exon-sc0006570-1491911889:462..1315Clytia hemisphaericaexon
TCONS_00044967-exon-sc0006570-1510915933:462..1315TCONS_00044967-exon-sc0006570-1510915933:462..1315Clytia hemisphaericaexon
TCONS_00044967-exon-sc0006570-1575043694:462..1315TCONS_00044967-exon-sc0006570-1575043694:462..1315Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006570supercontigsc0006570:462..1315 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.274988	0.665448	1.00664	1.42074	0.747525	0.649712	0.31576	0.544804	0.51945	0.757265	0.46015	0.565104	0.614892	1.11996	0.433499	0.401845	0.890759	0.546022	0.648622	0.537974	0.186558	0.357482	0	0.122574	1.94322	1.2152	0.239274	0.582374	0.268202	0.469761
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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