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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044950 ID=TCONS_00044950|Name=TCONS_00044950|organism=Clytia hemisphaerica|type=transcript|length=1787bp
CTGTTCTTAGTTGTTAAGCAAAGAGACTGTCCGTAACCCGGCTATTGGTT
ATTCCAATTTAAAAGCCCGATTGGAGAGCCGAGACTCGATCCGTCCAAGA
AGAAGATTCTCCAAAAACAAAATCTCCCAAACTTGCACCACAATGAAGTT
GCATGCGCTCTCCGTATACGTTTCGTCAGAAATCAGCGTCGAAAGTGCCA
TCGACAAGATAATCGATTGTGGTTATGGATCGGACATAATTGCTGTTACA
AGATCAATCAAACGCACTTACGTTCATCTTAAAAGTTTGGCAACAAAACA
ACATCTGCTAACAAAAGGTTTCTTCGATCCCGTCGAATCAGTTCCACTTG
TGGTGACAGCACAAGGAATCCCAATTGAACTGGACAAAAATGACGTTNCC
GTCGAATCAGTTCCACTTGTGGTGACAGCACAAGGAATCCCAATTGAACT
GGACAAAAATGACGTGTTTAACATCTTCAAGTCATGGGGAGAAGTCACCA
AAACAATTGCAACAACGAAAACTTACAGAAACATCCGCTATCGAAATGGA
AATTGGCAGATTCATTTCAAACGTTTCtacaaagaatttcaaaatcacaT
CTCGGCATCAAGCGAAGCCCTCAAAGAGAAAATCTATATCACAACAAAGT
TCGACAAAGCCGAAATGATCAAACGTGTGATACCAACAAAACCTTCACAA
AACCAACCCCCCCTACCTCCCTCTCAGCCCCAGAGAAgtggagaagaaaa
aacaaaataccaaGATACCAAACAACCACCGAATAAAGCGAAGAGTTCTG
GTGCCCAAGCATCCAATCAGCAGAAGGAACAGAGTGACGGTAAAAGCAAC
AAGCACTACTCACCTAAAACGAGGAGGGAGGAGAGTTTGCTATACGCTGA
TATCGTCTCGCTGCACGATTTGGATATGGACATCGAGGAAGAACAGGACG
CTGATTCATTGAACAAATCAAGTAGACCAACAACGAATATCGTCCAAATG
GACATTGAAGTTAATCCAACTCAAGTCATCCGTAAGACCCCAGAAGAGGG
ACACAACCAACCAAATCCGAagaagtccaaaaaaacaaccaaGCCAGTCC
AAGAATCAGTGGCGCAATCGGCAGCGCACCAGACTTCTAATCCAGAGGTC
GCAGTTCGAACCCCGTTCGGAACCAAAAATCAAGAACAAACAAAATCATC
TGGAGAATCAAGAAAAACACCATCAAAGGCAATTTTCACTGTCACCGACC
AAAAAGGTAAAAACATTTACAACGATTTCtcaaaatacgtcaaaaaaagG
AAGGAACACTTCGATAGCCATGACCCTAAACAATCACGTTTGAAATTTGG
TCTATCCTGGAAAGACTATAATTATGGACATGTAGCTTGGTCGTTCTTCC
TTAACACTGACGAGTGGGCAACTCTGATGCTTCGATATATAGAATTACGA
AATGATACAGAACTACCTGACCCCAACTACACACATTTTGTTGATGGGTA
CATTCGTTACAACGATGACGCCCCAGAAGGTTTCAGCAAATTAAATTCAG
CAAGGGAACAGGTAGATTTTCTAATTAACTTAGCATTAAATCGCTGGGAA
CAATACAAACTAACTAAATATTGCAAAGAGCCAAGCTTCGAAAACTGGGC
TATTTTGCGATATAATAGAGAATTATACTACAAATAAATATTTAACTTAT
TCTTTAGCAATGAGTACCAGACTTGACTCGACTTTGGGGCACTGAGGCAG
ttttctttggtcttttttgAATGGGGGGTAAACATGT Run BLAST on NCBI protein sequence of TCONS_00044950-protein >TCONS_00044950-protein ID=TCONS_00044950-protein|Name=TCONS_00044950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
MKLHALSVYVSSEISVESAIDKIIDCGYGSDIIAVTRSIKRTYVHLKSLA
TKQHLLTKGFFDPVESVPLVVTAQGIPIELDKNDVXVESVPLVVTAQGIP
IELDKNDVFNIFKSWGEVTKTIATTKTYRNIRYRNGNWQIHFKRFYKEFQ
NHISASSEALKEKIYITTKFDKAEMIKRVIPTKPSQNQPPLPPSQPQRSG
EEKTKYQDTKQPPNKAKSSGAQASNQQKEQSDGKSNKHYSPKTRREESLL
YADIVSLHDLDMDIEEEQDADSLNKSSRPTTNIVQMDIEVNPTQVIRKTP
EEGHNQPNPKKSKKTTKPVQESVAQSAAHQTSNPEVAVRTPFGTKNQEQT
KSSGESRKTPSKAIFTVTDQKGKNIYNDFSKYVKKRKEHFDSHDPKQSRL
KFGLSWKDYNYGHVAWSFFLNTDEWATLMLRYIELRNDTELPDPNYTHFV
DGYIRYNDDAPEGFSKLNSAREQVDFLINLALNRWEQYKLTKYCKEPSFE
NWAILRYNRELYYK Run BLAST on NCBI transcript from alignment at sc0006520:1..1787 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044950 ID=TCONS_00044950|Name=TCONS_00044950|organism=Clytia hemisphaerica|type=transcript|length=1787bp|location=Sequence derived from alignment at sc0006520:1..1787 (Clytia hemisphaerica)
ACATGTTTACCCCCCATTcaaaaaagaccaaagaaaaCTGCCTCAGTGCC
CCAAAGTCGAGTCAAGTCTGGTACTCATTGCTAAAGAATAAGTTAAATAT
TTATTTGTAGTATAATTCTCTATTATATCGCAAAATAGCCCAGTTTTCGA
AGCTTGGCTCTTTGCAATATTTAGTTAGTTTGTATTGTTCCCAGCGATTT
AATGCTAAGTTAATTAGAAAATCTACCTGTTCCCTTGCTGAATTTAATTT
GCTGAAACCTTCTGGGGCGTCATCGTTGTAACGAATGTACCCATCAACAA
AATGTGTGTAGTTGGGGTCAGGTAGTTCTGTATCATTTCGTAATTCTATA
TATCGAAGCATCAGAGTTGCCCACTCGTCAGTGTTAAGGAAGAACGACCA
AGCTACATGTCCATAATTATAGTCTTTCCAGGATAGACCAAATTTCAAAC
GTGATTGTTTAGGGTCATGGCTATCGAAGTGTTCCTTCctttttttgacg
tattttgaGAAATCGTTGTAAATGTTTTTACCTTTTTGGTCGGTGACAGT
GAAAATTGCCTTTGATGGTGTTTTTCTTGATTCTCCAGATGATTTTGTTT
GTTCTTGATTTTTGGTTCCGAACGGGGTTCGAACTGCGACCTCTGGATTA
GAAGTCTGGTGCGCTGCCGATTGCGCCACTGATTCTTGGACTGGCttggt
tgtttttttggacttctTCGGATTTGGTTGGTTGTGTCCCTCTTCTGGGG
TCTTACGGATGACTTGAGTTGGATTAACTTCAATGTCCATTTGGACGATA
TTCGTTGTTGGTCTACTTGATTTGTTCAATGAATCAGCGTCCTGTTCTTC
CTCGATGTCCATATCCAAATCGTGCAGCGAGACGATATCAGCGTATAGCA
AACTCTCCTCCCTCCTCGTTTTAGGTGAGTAGTGCTTGTTGCTTTTACCG
TCACTCTGTTCCTTCTGCTGATTGGATGCTTGGGCACCAGAACTCTTCGC
TTTATTCGGTGGTTGTTTGGTATCttggtattttgttttttcttctccac
TTCTCTGGGGCTGAGAGGGAGGTAGGGGGGGTTGGTTTTGTGAAGGTTTT
GTTGGTATCACACGTTTGATCATTTCGGCTTTGTCGAACTTTGTTGTGAT
ATAGATTTTCTCTTTGAGGGCTTCGCTTGATGCCGAGAtgtgattttgaa
attctttgtaGAAACGTTTGAAATGAATCTGCCAATTTCCATTTCGATAG
CGGATGTTTCTGTAAGTTTTCGTTGTTGCAATTGTTTTGGTGACTTCTCC
CCATGACTTGAAGATGTTAAACACGTCATTTTTGTCCAGTTCAATTGGGA
TTCCTTGTGCTGTCACCACAAGTGGAACTGATTCGACGGNAACGTCATTT
TTGTCCAGTTCAATTGGGATTCCTTGTGCTGTCACCACAAGTGGAACTGA
TTCGACGGGATCGAAGAAACCTTTTGTTAGCAGATGTTGTTTTGTTGCCA
AACTTTTAAGATGAACGTAAGTGCGTTTGATTGATCTTGTAACAGCAATT
ATGTCCGATCCATAACCACAATCGATTATCTTGTCGATGGCACTTTCGAC
GCTGATTTCTGACGAAACGTATACGGAGAGCGCATGCAACTTCATTGTGG
TGCAAGTTTGGGAGATTTTGTTTTTGGAGAATCTTCTTCTTGGACGGATC
GAGTCTCGGCTCTCCAATCGGGCTTTTAAATTGGAATAACCAATAGCCGG
GTTACGGACAGTCTCTTTGCTTAACAACTAAGAACAG Coding sequence (CDS) from alignment at sc0006520:1..1787 >TCONS_00044950 ID=TCONS_00044950|Name=TCONS_00044950|organism=Clytia hemisphaerica|type=CDS|length=1545bp|location=Sequence derived from alignment at sc0006520:1..1787 (Clytia hemisphaerica)
TTATTTGTAGTATAATTCTCTATTATATCGCAAAATAGCCCAGTTTTCGA
AGCTTGGCTCTTTGCAATATTTAGTTAGTTTGTATTGTTCCCAGCGATTT
AATGCTAAGTTAATTAGAAAATCTACCTGTTCCCTTGCTGAATTTAATTT
GCTGAAACCTTCTGGGGCGTCATCGTTGTAACGAATGTACCCATCAACAA
AATGTGTGTAGTTGGGGTCAGGTAGTTCTGTATCATTTCGTAATTCTATA
TATCGAAGCATCAGAGTTGCCCACTCGTCAGTGTTAAGGAAGAACGACCA
AGCTACATGTCCATAATTATAGTCTTTCCAGGATAGACCAAATTTCAAAC
GTGATTGTTTAGGGTCATGGCTATCGAAGTGTTCCTTCctttttttgacg
tattttgaGAAATCGTTGTAAATGTTTTTACCTTTTTGGTCGGTGACAGT
GAAAATTGCCTTTGATGGTGTTTTTCTTGATTCTCCAGATGATTTTGTTT
GTTCTTGATTTTTGGTTCCGAACGGGGTTCGAACTGCGACCTCTGGATTA
GAAGTCTGGTGCGCTGCCGATTGCGCCACTGATTCTTGGACTGGCttggt
tgtttttttggacttctTCGGATTTGGTTGGTTGTGTCCCTCTTCTGGGG
TCTTACGGATGACTTGAGTTGGATTAACTTCAATGTCCATTTGGACGATA
TTCGTTGTTGGTCTACTTGATTTGTTCAATGAATCAGCGTCCTGTTCTTC
CTCGATGTCCATATCCAAATCGTGCAGCGAGACGATATCAGCGTATAGCA
AACTCTCCTCCCTCCTCGTTTTAGGTGAGTAGTGCTTGTTGCTTTTACCG
TCACTCTGTTCCTTCTGCTGATTGGATGCTTGGGCACCAGAACTCTTCGC
TTTATTCGGTGGTTGTTTGGTATCttggtattttgttttttcttctccac
TTCTCTGGGGCTGAGAGGGAGGTAGGGGGGGTTGGTTTTGTGAAGGTTTT
GTTGGTATCACACGTTTGATCATTTCGGCTTTGTCGAACTTTGTTGTGAT
ATAGATTTTCTCTTTGAGGGCTTCGCTTGATGCCGAGAtgtgattttgaa
attctttgtaGAAACGTTTGAAATGAATCTGCCAATTTCCATTTCGATAG
CGGATGTTTCTGTAAGTTTTCGTTGTTGCAATTGTTTTGGTGACTTCTCC
CCATGACTTGAAGATGTTAAACACGTCATTTTTGTCCAGTTCAATTGGGA
TTCCTTGTGCTGTCACCACAAGTGGAACTGATTCGACGGNAACGTCATTT
TTGTCCAGTTCAATTGGGATTCCTTGTGCTGTCACCACAAGTGGAACTGA
TTCGACGGGATCGAAGAAACCTTTTGTTAGCAGATGTTGTTTTGTTGCCA
AACTTTTAAGATGAACGTAAGTGCGTTTGATTGATCTTGTAACAGCAATT
ATGTCCGATCCATAACCACAATCGATTATCTTGTCGATGGCACTTTCGAC
GCTGATTTCTGACGAAACGTATACGGAGAGCGCATGCAACTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044950-exon-sc0006520-1491911889:1..1787 | TCONS_00044950-exon-sc0006520-1491911889:1..1787 | Clytia hemisphaerica | exon |
| TCONS_00044950-exon-sc0006520-1510915933:1..1787 | TCONS_00044950-exon-sc0006520-1510915933:1..1787 | Clytia hemisphaerica | exon |
| TCONS_00044950-exon-sc0006520-1575043694:1..1787 | TCONS_00044950-exon-sc0006520-1575043694:1..1787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006520 | supercontig | sc0006520:1..1787 . |
Blast
The following BLAST results are available for this feature:
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