TCONS_00044946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044946
Unique NameTCONS_00044946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044946 ID=TCONS_00044946|Name=TCONS_00044946|organism=Clytia hemisphaerica|type=transcript|length=391bp
CACAAGGTGTACATGGTGGGGGTGGAGGTGGACAAGGTGCCATCATACAT
GGGGGAGGAGGTGGAGGACACGAAGGTTGGCAAATTGGTGGTGGTGGTCC
TGGTGGGGTAGCACAACAAGATTCTGAGCATGAAGGGGCACAGAGAGAAG
AACAAGGGAATTGACAAGTGACTGGTTTGGCTTGTGCTGGTGGTGCTGGA
GGTGGTGGGATATTTGGTCCTGGTAGGTATGCTGGTCGCTCTTTGAATTT
CGCTGGTCGTGGCTTGGGTGGTAGAACGTATCCAATAGGTGGTGGTGCCA
TAGGAGGGTTTTCACAACATTCAGGTGTACAGCTTGGATAACATGTCGGT
GCACATGCACTACATGATGGTGCCATTTGACCTGCTTGATC
Run BLAST on NCBI

transcript from alignment at sc0006507:1288..1795-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044946 ID=TCONS_00044946|Name=TCONS_00044946|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at sc0006507:1288..1795- (Clytia hemisphaerica)
CACAAGGTGTACATGGTGGGGGTGGAGGTGGACAAGGTGCCATCATGCAA
GGTGGTGGTGGTGGTGGACAAGAAGGTTGACAAGTGGGCATGGGCATTGG
TGGTGGTGCTGGGGGTGCGCAAGGTGTACATGGAGGGGGAGGTGGTAGAC
AAGGTGCCATCATACATGGGGGAGGAGGTGGAGGACACGAAGGTTGGCAA
ATTGGTGGTGGTGGTCCTGGTGGGGTAGCACAACAAGATTCTGAGCATGA
AGGGGCACAGAGAGAAGAACAAGGGAATTGACAAGTGACTGGTTTGGCTT
GTGCTGGTGGTGCTGGAGGTGGTGGGATATTTGGTCCTGGTAGGTATGCT
GGTCGCTCTTTGAATTTCGCTGGTCGTGGCTTGGGTGGTAGAACGTATCC
AATAGGTGGTGGTGCCATAGGAGGGTTTTCACAACATTCAGGTGTACAGC
TTGGATAACATGTCGGTGCACATGCACTACATGATGGTGCCATTTGACCT
GCTTGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028537XLOC_028537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044946-exon-sc0006507-1575043694:1760..1795TCONS_00044946-exon-sc0006507-1575043694:1760..1795Clytia hemisphaericaexon
TCONS_00044946-exon-sc0006507-1575043694:1288..1642TCONS_00044946-exon-sc0006507-1575043694:1288..1642Clytia hemisphaericaexon
TCONS_00044946-exon-sc0006507-1510915933:1760..1795TCONS_00044946-exon-sc0006507-1510915933:1760..1795Clytia hemisphaericaexon
TCONS_00044946-exon-sc0006507-1510915933:1288..1642TCONS_00044946-exon-sc0006507-1510915933:1288..1642Clytia hemisphaericaexon
TCONS_00044946-exon-sc0006507-1491911889:1760..1795TCONS_00044946-exon-sc0006507-1491911889:1760..1795Clytia hemisphaericaexon
TCONS_00044946-exon-sc0006507-1491911889:1288..1642TCONS_00044946-exon-sc0006507-1491911889:1288..1642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006507supercontigsc0006507:1288..1795 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.01615	1.41485	1.39539	2.08729	0	0	0	1.59556	4.45397	9.96236	0	2.36387	0	0	2.55522	0	0	0	0	1.70673	0	0.282091	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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