TCONS_00044942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044942
Unique NameTCONS_00044942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044942 ID=TCONS_00044942|Name=TCONS_00044942|organism=Clytia hemisphaerica|type=transcript|length=751bp
GCAGGAGCTCTCAATAAGCAACCTGCTATTCCTGCTCCTAAGCCTTCACC
AGCGCAAACCAAGCCACAAGCGAGTCCACCAAAACCAGCTCAAAAAGCAG
CTGAAAAACTACCGGCAAAACAACAAGCACAACCAGCATCACAACCATCA
CCTTATGATCCACAACAGATTGATCAACCGGGAGCTTTCGGATATCAACA
GTCTCTACCTGATGGAGGTGCAAGAGGCTACCTTATACTTGATCAAGCAG
GTCAAATGGCACCATCATGTAGTGCATGTGCACCGACATGTTATCCAAGC
TGTACACCTGAATGTTGTGAAAACCCTCCTATGGCACCACCACCTATTGG
ATACGTTCTACCACCCAAGCCACGACCAGCGAAATTCAAAGAGCGACCAG
CATACCTACCAGGACCAAATATCCCACCACCTCCAGCACCACCAGCACAA
GCCAAACCAGTCACTTGTCAATTCCCTTGTTCTTCTCTCTGTGCCCCTTC
ATGCTCAGAATCTTGTTGTGCTACCCCACCAGGACCACCACCACCAATTT
GCCAACCTTCGTGTCCTCCACCTCCTCCCCCATGTATGATGGCACCTTGT
CTACCACCTCCCCCTCCATGTACACCTTGCGCACCCCCAGCACCACCACC
AATGCCCATGCCCACTTGTCAACCTTCTtgtccaccaccaccaccacctt
GCATGATGGCACCTTGTCCACCTCCACCCCCACCATGTACACCTTGTGCC
G
Run BLAST on NCBI

protein sequence of TCONS_00044942-protein

>TCONS_00044942-protein ID=TCONS_00044942-protein|Name=TCONS_00044942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
AGALNKQPAIPAPKPSPAQTKPQASPPKPAQKAAEKLPAKQQAQPASQPS
PYDPQQIDQPGAFGYQQSLPDGGARGYLILDQAGQMAPSCSACAPTCYPS
CTPECCENPPMAPPPIGYVLPPKPRPAKFKERPAYLPGPNIPPPPAPPAQ
AKPVTCQFPCSSLCAPSCSESCCATPPGPPPPICQPSCPPPPPPCMMAPC
LPPPPPCTPCAPPAPPPMPMPTCQPSCPPPPPPCMMAPCPPPPPPCTPCA
Run BLAST on NCBI

transcript from alignment at sc0006507:1..1798+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044942 ID=TCONS_00044942|Name=TCONS_00044942|organism=Clytia hemisphaerica|type=transcript|length=1798bp|location=Sequence derived from alignment at sc0006507:1..1798+ (Clytia hemisphaerica)
GCAGGAGCTCTCAATAAGCAACCTGCTATTCCTGCTCCTAAGCCTTCACC
AGCGCAAACCAAGCCACAAGCGAGTCCACCAAAACCAGCTCAAAAAGCAG
CTGAAAAACTACCGGCAAAACAACAAGCACAACCAGCATCACAACCATCA
CCTTATGATCCACAACAGATTGATCAACCGGGAGCTTTCGGATATCAACA
GTCTCTACCTGATGGAGGTGCAAGAGGCTACCTTATACTTGGTATGTTGC
ATAAATTTTAGtctctagaaacctttgtgtgctatttttaataaaaaaaa
aaatctaggggtttgttcgaaaaaaaatagtttgttttgattgcttaaat
cgatttgattggtttagaaaaaCAATCGAGACGCACATCATCGATTGAAA
CACATAAAAGGAGAAATCAGAACACACGATAACTTTCTCTCTCGAAAAAT
TATTCTCGATTGTTTtaaactaccttatcggccaaaacttagtcggccct
aagcgACTAAATATTGGCTTGGTGACTAGAATtcgggccgactaaaaatt
tgggccaaattaaaagtttataatttaagctttccttattttccagtatt
ttaagNagccaaattaaaagtttataattaagctttccttattttccatc
tgcttgtaaatttagaaatggcccaaatttttagtcagtcttaattatta
gtcggcccttagtgactaaattttgacgaagtgactaaaattagggccga
ctgagttttggccgataaggtagctccaaacaaaagaaaagtgtcaattt
tacaattatatttttttcccgctcaaaaaagttcttaaaaaaagtgtatg
tggatttgtgtgctaaaattattgttttgttttgttttgagagtttgttg
ttgctggATCAAGAATTAATTTCTTCTTATCTTTCGCGCGCCAATTTCTT
AACGGAAGCACCACCATCcgagaaaaactttcttttgttttcagaaaaaa
cccTTTGTTTTCTCACTACGCAAGTTTCTGGGTAGCTAGCCGGGGATTCT
TTAAGGCCGGAACActggattcttccagtcgtttatacaaactaagaTAG
AACGCATGAACCATTAATTTTTTGATTGTAGTATTGCCAGTGGACATAAA
ATGTTGAGATGAAAGATTTTAAACTCAACTATCGACTTTTTTTAAGATCA
AGCAGGTCAAATGGCACCATCATGTAGTGCATGTGCACCGACATGTTATC
CAAGCTGTACACNAACTCAACTATCGACTTTTTTTAAGATCAAGCAGGTC
AAATGGCACCATCATGTAGTGCATGTGCACCGACATGTTATCCAAGCTGT
ACACCTGAATGTTGTGAAAACCCTCCTATGGCACCACCACCTATTGGATA
CGTTCTACCACCCAAGCCACGACCAGCGAAATTCAAAGAGCGACCAGCAT
ACCTACCAGGACCAAATATCCCACCACCTCCAGCACCACCAGCACAAGCC
AAACCAGTCACTTGTCAATTCCCTTGTTCTTCTCTCTGTGCCCCTTCATG
CTCAGAATCTTGTTGTGCTACCCCACCAGGACCACCACCACCAATTTGCC
AACCTTCGTGTCCTCCACCTCCTCCCCCATGTATGATGGCACCTTGTCTA
CCACCTCCCCCTCCATGTACACCTTGCGCACCCCCAGCACCACCACCAAT
GCCCATGCCCACTTGTCAACCTTCTtgtccaccaccaccaccaccttGCA
TGATGGCACCTTGTCCACCTCCACCCCCACCATGTACACCTTGTGCCG

Coding sequence (CDS) from alignment at sc0006507:1..1798+

>TCONS_00044942 ID=TCONS_00044942|Name=TCONS_00044942|organism=Clytia hemisphaerica|type=CDS|length=2250bp|location=Sequence derived from alignment at sc0006507:1..1798+ (Clytia hemisphaerica)
GCAGGAGCTCTCAATAAGCAACCTGCTATTCCTGCTCCTAAGCCTTCACC
AGCGCAAACCAAGCCACAAGCGAGTCCACCAAAACCAGCTCAAAAAGCAG
CTGAAAAACTACCGGCAAAACAACAAGCACAACCAGCATCACAACCATCA
CCTTATGATCCACAACAGATTGATCAACCGGGAGCTTTCGGATATCAACA
GTCTCTACCTGATGGAGGTGCAAGAGGCTACCTTATACTTGATCAAGCAG
GTCAAATGGCACCATCATGTAGTGCATGTGCACCGACATGTTATCCAAGC
TGTACACCTGAATGTTGTGAAAACCCTCCTATGGCACCACCACCTATTGG
ATACGTTCTACCACCCAAGCCACGACCAGCGAAATTCAAAGAGCGACCAG
CATACCTACCAGGACCAAATATCCCACCACCTCCAGCACCACCAGCACAA
GCCAAACCAGTCACTTGTCAATTCCCTTGTTCTTCTCTCTGTGCCCCTTC
ATGCTCAGAATCTTGTTGTGCTACCCCACCAGGACCACCACCACCAATTT
GCCAACCTTCGTGTCCTCCACCTCCTCCCCCATGTATGATGGCACCTTGT
CTACCACCTCCCCCTCCATGTACACCTTGCGCACCCCCAGCACCACCACC
AATGCCCATGCCCACTTGTCAACCTTCTtgtccaccaccaccaccacctt
GCATGATGGCACCTTGTCCACCTCCACCCCCACCATGTACACCTTGTGCC
GCAGGAGCTCTCAATAAGCAACCTGCTATTCCTGCTCCTAAGCCTTCACC
AGCGCAAACCAAGCCACAAGCGAGTCCACCAAAACCAGCTCAAAAAGCAG
CTGAAAAACTACCGGCAAAACAACAAGCACAACCAGCATCACAACCATCA
CCTTATGATCCACAACAGATTGATCAACCGGGAGCTTTCGGATATCAACA
GTCTCTACCTGATGGAGGTGCAAGAGGCTACCTTATACTTGATCAAGCAG
GTCAAATGGCACCATCATGTAGTGCATGTGCACCGACATGTTATCCAAGC
TGTACACCTGAATGTTGTGAAAACCCTCCTATGGCACCACCACCTATTGG
ATACGTTCTACCACCCAAGCCACGACCAGCGAAATTCAAAGAGCGACCAG
CATACCTACCAGGACCAAATATCCCACCACCTCCAGCACCACCAGCACAA
GCCAAACCAGTCACTTGTCAATTCCCTTGTTCTTCTCTCTGTGCCCCTTC
ATGCTCAGAATCTTGTTGTGCTACCCCACCAGGACCACCACCACCAATTT
GCCAACCTTCGTGTCCTCCACCTCCTCCCCCATGTATGATGGCACCTTGT
CTACCACCTCCCCCTCCATGTACACCTTGCGCACCCCCAGCACCACCACC
AATGCCCATGCCCACTTGTCAACCTTCTtgtccaccaccaccaccacctt
GCATGATGGCACCTTGTCCACCTCCACCCCCACCATGTACACCTTGTGCC
GCAGGAGCTCTCAATAAGCAACCTGCTATTCCTGCTCCTAAGCCTTCACC
AGCGCAAACCAAGCCACAAGCGAGTCCACCAAAACCAGCTCAAAAAGCAG
CTGAAAAACTACCGGCAAAACAACAAGCACAACCAGCATCACAACCATCA
CCTTATGATCCACAACAGATTGATCAACCGGGAGCTTTCGGATATCAACA
GTCTCTACCTGATGGAGGTGCAAGAGGCTACCTTATACTTGATCAAGCAG
GTCAAATGGCACCATCATGTAGTGCATGTGCACCGACATGTTATCCAAGC
TGTACACCTGAATGTTGTGAAAACCCTCCTATGGCACCACCACCTATTGG
ATACGTTCTACCACCCAAGCCACGACCAGCGAAATTCAAAGAGCGACCAG
CATACCTACCAGGACCAAATATCCCACCACCTCCAGCACCACCAGCACAA
GCCAAACCAGTCACTTGTCAATTCCCTTGTTCTTCTCTCTGTGCCCCTTC
ATGCTCAGAATCTTGTTGTGCTACCCCACCAGGACCACCACCACCAATTT
GCCAACCTTCGTGTCCTCCACCTCCTCCCCCATGTATGATGGCACCTTGT
CTACCACCTCCCCCTCCATGTACACCTTGCGCACCCCCAGCACCACCACC
AATGCCCATGCCCACTTGTCAACCTTCTtgtccaccaccaccaccacctt
GCATGATGGCACCTTGTCCACCTCCACCCCCACCATGTACACCTTGTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028536XLOC_028536Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044942-proteinTCONS_00044942-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044942-exon-sc0006507-1491911889:1..241TCONS_00044942-exon-sc0006507-1491911889:1..241Clytia hemisphaericaexon
TCONS_00044942-exon-sc0006507-1510915933:1..241TCONS_00044942-exon-sc0006507-1510915933:1..241Clytia hemisphaericaexon
TCONS_00044942-exon-sc0006507-1575043694:1..241TCONS_00044942-exon-sc0006507-1575043694:1..241Clytia hemisphaericaexon
TCONS_00044942-exon-sc0006507-1491911889:1197..1242TCONS_00044942-exon-sc0006507-1491911889:1197..1242Clytia hemisphaericaexon
TCONS_00044942-exon-sc0006507-1510915933:1197..1242TCONS_00044942-exon-sc0006507-1510915933:1197..1242Clytia hemisphaericaexon
TCONS_00044942-exon-sc0006507-1575043694:1197..1242TCONS_00044942-exon-sc0006507-1575043694:1197..1242Clytia hemisphaericaexon
TCONS_00044942-exon-sc0006507-1491911889:1335..1798TCONS_00044942-exon-sc0006507-1491911889:1335..1798Clytia hemisphaericaexon
TCONS_00044942-exon-sc0006507-1510915933:1335..1798TCONS_00044942-exon-sc0006507-1510915933:1335..1798Clytia hemisphaericaexon
TCONS_00044942-exon-sc0006507-1575043694:1335..1798TCONS_00044942-exon-sc0006507-1575043694:1335..1798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006507supercontigsc0006507:1..1798 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.940865	1.31693	19.8913	23.0237	8.04537	9.92948	24.8104	9.97376	22.9026	20.4475	18.9802	60.2009	33.895	36.0563	0.0347912	0.0679888	20.1933	24.0939	18.1744	15.6189	16.9322	17.6868	2.88875	0.28843	0.0363261	0.0546587
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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