TCONS_00044941 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044941
Unique NameTCONS_00044941
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044941 ID=TCONS_00044941|Name=TCONS_00044941|organism=Clytia hemisphaerica|type=transcript|length=751bp
GCAGGAGCTCTCAATAAGCAACCTGCTATTCCTGCTCCTAAGCCTTCACC
AGCGCAAACCAAGCCACAAGCGAGTCCACCAAAACCAGCTCAAAAAGCAG
CTGAAAAACTACCGGCAAAACAACAAGCACAACCAGCATCACAACCATCA
CCTTATGATCCACAACAGATTGATCAACCGGGAGCTTTCGGATATCAACA
GTCTCTACCTGATGGAGGTGCAAGAGGCTACCTTATACTTGATCAAGCAG
GTCAAATGGCACCATCATGTAGTGCATGTGCACCGACATGTTATCCAAGC
TGTACACCTGAATGTTGTGAAAACCCTCCTATGGCACCACCACCTATTGG
ATACGTTCTACCACCCAAGCCACGACCAGCGAAATTCAAAGAGCGACCAG
CATACCTACCAGGACCAAATATCCCACCACCTCCAGCACCACCAGCACAA
GCCAAACCAGTCACTTGTCAATTCCCTTGTTCTTCTCTCTGTGCCCCTTC
ATGCTCAGAATCTTGTTGTGCTACCCCACCAGGACCACCACCACCAATTT
GCCAACCTTCGTGTCCTCCACCTCCTCCCCCATGTATGATGGCACCTTGT
CTACCACCTCCCCCTCCATGTACACCTTGCGCACCCCCAGCACCACCACC
AATGCCCATGCCCACTTGTCAACCTTCTtgtccaccaccaccaccacctt
GCATGATGGCACCTTGTCCACCTCCACCCCCACCATGTACACCTTGTGCC
G
Run BLAST on NCBI

transcript from alignment at sc0006507:1..1798+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044941 ID=TCONS_00044941|Name=TCONS_00044941|organism=Clytia hemisphaerica|type=transcript|length=1798bp|location=Sequence derived from alignment at sc0006507:1..1798+ (Clytia hemisphaerica)
GCAGGAGCTCTCAATAAGCAACCTGCTATTCCTGCTCCTAAGCCTTCACC AGCGCAAACCAAGCCACAAGCGAGTCCACCAAAACCAGCTCAAAAAGCAG CTGAAAAACTACCGGCAAAACAACAAGCACAACCAGCATCACAACCATCA CCTTATGATCCACAACAGATTGATCAACCGGGAGCTTTCGGATATCAACA GTCTCTACCTGATGGAGGTGCAAGAGGCTACCTTATACTTGGTATGTTGC ATAAATTTTAGtctctagaaacctttgtgtgctatttttaataaaaaaaa aaatctaggggtttgttcgaaaaaaaatagtttgttttgattgcttaaat cgatttgattggtttagaaaaaCAATCGAGACGCACATCATCGATTGAAA CACATAAAAGGAGAAATCAGAACACACGATAACTTTCTCTCTCGAAAAAT TATTCTCGATTGTTTtaaactaccttatcggccaaaacttagtcggccct aagcgACTAAATATTGGCTTGGTGACTAGAATtcgggccgactaaaaatt tgggccaaattaaaagtttataatttaagctttccttattttccagtatt ttaagNagccaaattaaaagtttataattaagctttccttattttccatc tgcttgtaaatttagaaatggcccaaatttttagtcagtcttaattatta gtcggcccttagtgactaaattttgacgaagtgactaaaattagggccga ctgagttttggccgataaggtagctccaaacaaaagaaaagtgtcaattt tacaattatatttttttcccgctcaaaaaagttcttaaaaaaagtgtatg tggatttgtgtgctaaaattattgttttgttttgttttgagagtttgttg ttgctggATCAAGAATTAATTTCTTCTTATCTTTCGCGCGCCAATTTCTT AACGGAAGCACCACCATCcgagaaaaactttcttttgttttcagaaaaaa cccTTTGTTTTCTCACTACGCAAGTTTCTGGGTAGCTAGCCGGGGATTCT TTAAGGCCGGAACActggattcttccagtcgtttatacaaactaagaTAG AACGCATGAACCATTAATTTTTTGATTGTAGTATTGCCAGTGGACATAAA ATGTTGAGATGAAAGATTTTAAACTCAACTATCGACTTTTTTTAAGATCA AGCAGGTCAAATGGCACCATCATGTAGTGCATGTGCACCGACATGTTATC CAAGCTGTACACNAACTCAACTATCGACTTTTTTTAAGATCAAGCAGGTC AAATGGCACCATCATGTAGTGCATGTGCACCGACATGTTATCCAAGCTGT ACACCTGAATGTTGTGAAAACCCTCCTATGGCACCACCACCTATTGGATA CGTTCTACCACCCAAGCCACGACCAGCGAAATTCAAAGAGCGACCAGCAT ACCTACCAGGACCAAATATCCCACCACCTCCAGCACCACCAGCACAAGCC AAACCAGTCACTTGTCAATTCCCTTGTTCTTCTCTCTGTGCCCCTTCATG CTCAGAATCTTGTTGTGCTACCCCACCAGGACCACCACCACCAATTTGCC AACCTTCGTGTCCTCCACCTCCTCCCCCATGTATGATGGCACCTTGTCTA CCACCTCCCCCTCCATGTACACCTTGCGCACCCCCAGCACCACCACCAAT GCCCATGCCCACTTGTCAACCTTCTtgtccaccaccaccaccaccttGCA TGATGGCACCTTGTCCACCTCCACCCCCACCATGTACACCTTGTGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028536XLOC_028536Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044941-exon-sc0006507-1491911889:1..241TCONS_00044941-exon-sc0006507-1491911889:1..241Clytia hemisphaericaexon
TCONS_00044941-exon-sc0006507-1510915933:1..241TCONS_00044941-exon-sc0006507-1510915933:1..241Clytia hemisphaericaexon
TCONS_00044941-exon-sc0006507-1575043694:1..241TCONS_00044941-exon-sc0006507-1575043694:1..241Clytia hemisphaericaexon
TCONS_00044941-exon-sc0006507-1491911889:1289..1798TCONS_00044941-exon-sc0006507-1491911889:1289..1798Clytia hemisphaericaexon
TCONS_00044941-exon-sc0006507-1510915933:1289..1798TCONS_00044941-exon-sc0006507-1510915933:1289..1798Clytia hemisphaericaexon
TCONS_00044941-exon-sc0006507-1575043694:1289..1798TCONS_00044941-exon-sc0006507-1575043694:1289..1798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006507supercontigsc0006507:1..1798 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.940865 1.31693 19.8913 23.0237 8.04537 9.92948 24.8104 9.97376 22.9026 20.4475 18.9802 60.2009 33.895 36.0563 0.0347912 0.0679888 20.1933 24.0939 18.1744 15.6189 16.9322 17.6868 2.88875 0.28843 0.0363261 0.0546587
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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