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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044926 ID=TCONS_00044926|Name=TCONS_00044926|organism=Clytia hemisphaerica|type=transcript|length=1730bp
TCTTCATGTCCATGACCTTATCTCTCCACCAGGAGCATTCTATTTTACAT
TCAGGAGTGAGCCTAATTTTAGCATCAAAATTGTCTTTGTTTTCTCGAAG
ACAAGGCCCATATGTTGAGCCAGGAAAGGTTGCAACGATTTTACCAATAA
ATCCAGCTAATTGTCTGATAGATATTTGAAAGGATTCTATTAAGGTAACT
GCAAAACTCAAAATGTCATCTTTTTTCTCCTGTGTTATTTCAACAGTCAT
GTCAATGGAATTAATCACAAAACCTAGATATGTAATCTCATTTGATGGTA
TTAAATGGGATTTTATTGGATGGATAACNCAAAACTCAAAATGTCATCTT
TTTTCTCCTGTGTTATTTCAACAGTCATGTCAATGGAATTAATCACAAAA
CCTAGATATGTAATCTCATTTGATGGTATTAAATGGGATTTTATTGGATG
GATAACATAACCAACTCCATCGAAgagttttattgattttatgaCTCCTT
TTTCACATTCCTTGTATGTTTgaccttgaaggaagaaatcGTCAATAAAT
TCAACAACAAAATGGCCTTTTTGTCAGCAAAGGTTTGTTCAGTTTTGTAA
ACTTCCTTGGACATGGTCCGAGGCCATTCGGGTAACAGGTAAATTTATAG
AGTCTtccatcaaaagaaaattttaaaaatctttgatatttttcatcaat
tctAACACTGTAATATGCATCTTTGAGATCCATGGATGCCATGTAACATT
TAGGAGTGATATTTTCTAAAACAGTTTTAATAGTATCCATTTTAAAGTGT
TTAAACTCAACATTTTTATTAAGATTTTTNTATTTAGGAGTGATATTTTC
TAATACGGTTTAAATAGTATCCATTTTTAAGTGTTTAAACTCAACATTTT
TATTAAGATTTTTTAGATTCAAAATAAATCTTCTTCAACCATCAGTTTTT
GGTACTGTGAAAATTGGGGAGAcaaattctttttcttctgGTTCACATTG
AACTATTACCCcttttgaaataagtttttgaatttctgTTGACACAAAGG
CTTCTTCCACAAGAGTGAAATtagcatttttacaaaaatgctgATAATAG
AAATCATGGTTAAATTTAATAGTGTCACNAAGTGAAATTGAAATAATGAT
AATAGAAATCATGGTTAAATTTAATAGTGTCACCAAGAACAATTTGAAGA
ATTTCTGGATCACTTGTATAATTCTCCCATTCTTCTAAATGATTGGAGAG
TTGTCCAGCACTAAAGTTTTCAACTTTCGCTGTTAAGTAATCATTCAATG
CTTCAATTTGttctttgatgtttttcaaAGAACTCACTTTtagttttttc
tcttttgatttctgttgttgttgttgttgcttgaATGACGATGATTGTGA
TAATTCTTCCGACCTTGTTGCCAGGNCCACTAAAGTTTTCAACTTTGGCT
GTTAAGTAATCATTCAATGCTTCAATTTGttctttgatgtttttcaaAGA
ACTCACTTTtagttttttctcttttgatttctgttgttgttgttgttgct
tgaATGACGATGATTGTGATAATTATTCCGACCTTGTTGCCAGGAATTTC
GGCCGTGTCCTAAAAAAGACTGCGATTTATTGTAAGATTTGTCTTGTCTG
TCATAGGATTCTTTCTTTTGGTAAGACGATCGGTTGTTGTACTTCTTTAT
TTTTCCACCAACTTTGTTGGTAATATCAAT Run BLAST on NCBI transcript from alignment at sc0006479:9..1838+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044926 ID=TCONS_00044926|Name=TCONS_00044926|organism=Clytia hemisphaerica|type=transcript|length=1830bp|location=Sequence derived from alignment at sc0006479:9..1838+ (Clytia hemisphaerica)
TCTTCATGTCCATGACCTTATCTCTCCACCAGGAGCATTCTATTTTACAT
TCAGGAGTGAGCCTAATTTTAGCATCAAAATTGTCTTTGTTTTCTCGAAG
ACAAGGCCCATATGTTGAGCCAGGAAAGGTTGCAACGATTTTACCAATAA
ATCCAGCTAATTGTCTGATAGATATTTGAAAGGATTCTATTAAGGTAACT
GCAAAACTCAAAATGTCATCTTTTTTCTCCTGTGTTATTTCAACAGTCAT
GTCAATGGAATTAATCACAAAACCTAGATATGTAATCTCATTTGATGGTA
TTAAATGGGATTTTATTGGATGGATAACNCAAAACTCAAAATGTCATCTT
TTTTCTCCTGTGTTATTTCAACAGTCATGTCAATGGAATTAATCACAAAA
CCTAGATATGTAATCTCATTTGATGGTATTAAATGGGATTTTATTGGATG
GATAACATAACCAACTCCATCGAAgagttttattgattttatgaCTCCTT
TTTCACATTCCTTGTATGTTTgaccttgaaggaagaaatcGTCAATAAAT
TCAACAACAAAATGGCCTTTTTGTCAGCAAAGGTTTGTTCAGTTTTGTAA
ACTTCCTTGGACATGGTCCGAGGCCATTCGGGTAACAGGTAAATTTATAG
AGTCTtccatcaaaagaaaattttaaaaatctttgatatttttcatcaat
tctAACACTGTAATATGCATCTTTGAGATCCATGGATGCCATGTAACATT
TAGGAGTGATATTTTCTAAAACAGTTTTAATAGTATCCATTTTAAAGTGT
TTAAACTCAACATTTTTATTAAGATTTTTNTATTTAGGAGTGATATTTTC
TAATACGGTTTAAATAGTATCCATTTTTAAGTGTTTAAACTCAACATTTT
TATTAAGATTTTTTAGATTCAAAATAAATCTTCTTCAACCATCAGTTTTT
GGTACTGTGAAAATTGGGGAGAcaaattctttttcttctgGTTCACATTG
AACTATTACCCcttttgaaataagtttttgaatttctgTTGACACAAAGG
CTTCTTCCACAAGAGTGAAATTAGNATTCTTTTTCTTCTGGTTCACATTG
AACTATTACCCcttttgaaataagtttttgaatttttgttgacACAAAGG
CTTCTTCCACAAGAGTGAAATtagcatttttacaaaaatgctgATAATAG
AAATCATGGTTAAATTTAATAGTGTCACNAAGTGAAATTGAAATAATGAT
AATAGAAATCATGGTTAAATTTAATAGTGTCACCAAGAACAATTTGAAGA
ATTTCTGGATCACTTGTATAATTCTCCCATTCTTCTAAATGATTGGAGAG
TTGTCCAGCACTAAAGTTTTCAACTTTCGCTGTTAAGTAATCATTCAATG
CTTCAATTTGttctttgatgtttttcaaAGAACTCACTTTtagttttttc
tcttttgatttctgttgttgttgttgttgcttgaATGACGATGATTGTGA
TAATTCTTCCGACCTTGTTGCCAGGNCCACTAAAGTTTTCAACTTTGGCT
GTTAAGTAATCATTCAATGCTTCAATTTGttctttgatgtttttcaaAGA
ACTCACTTTtagttttttctcttttgatttctgttgttgttgttgttgct
tgaATGACGATGATTGTGATAATTATTCCGACCTTGTTGCCAGGAATTTC
GGCCGTGTCCTAAAAAAGACTGCGATTTATTGTAAGATTTGTCTTGTCTG
TCATAGGATTCTTTCTTTTGGTAAGACGATCGGTTGTTGTACTTCTTTAT
TTTTCCACCAACTTTGTTGGTAATATCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044926-exon-sc0006479-1491911889:9..1057 | TCONS_00044926-exon-sc0006479-1491911889:9..1057 | Clytia hemisphaerica | exon |
| TCONS_00044926-exon-sc0006479-1510915933:9..1057 | TCONS_00044926-exon-sc0006479-1510915933:9..1057 | Clytia hemisphaerica | exon |
| TCONS_00044926-exon-sc0006479-1575043694:9..1057 | TCONS_00044926-exon-sc0006479-1575043694:9..1057 | Clytia hemisphaerica | exon |
| TCONS_00044926-exon-sc0006479-1491911889:1158..1838 | TCONS_00044926-exon-sc0006479-1491911889:1158..1838 | Clytia hemisphaerica | exon |
| TCONS_00044926-exon-sc0006479-1510915933:1158..1838 | TCONS_00044926-exon-sc0006479-1510915933:1158..1838 | Clytia hemisphaerica | exon |
| TCONS_00044926-exon-sc0006479-1575043694:1158..1838 | TCONS_00044926-exon-sc0006479-1575043694:1158..1838 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006479 | supercontig | sc0006479:9..1838 + |
Blast
The following BLAST results are available for this feature:
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