TCONS_00044924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044924
Unique NameTCONS_00044924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044924 ID=TCONS_00044924|Name=TCONS_00044924|organism=Clytia hemisphaerica|type=transcript|length=461bp
GAAAGGGAGATCGTcgatactttttgaatgtttactggcatcaaagaagt
gctAATAATACGAATTTCAATGACCAATGTGATTTGACAGTACAGGCAAA
AAAACTGAAGAAGTAACGGATCCAGGCAAGAAACAGAACAATCCACCCGT
CAAATTCTACAAAGGAAAACAGCGAGCGAAAAAGAAACGAAGACAAAGAG
CTGGCTTCTAATTGCATATACAGAATCATAAGTAATTAATAATAAAGAac
aagtaaaataaaattttagaaaatatttcgCTGTCACCATTTGTTCATGT
TTGTTGTGAAGCAACAACTTTTATGAAAGAACGTTTAAATCACTATATTT
TGAGACGTTTTACTATTGATTTTCAGGCTCGGAAAAAGGGTGTTTAGGGA
GCAAAAATTGGTTCCCTGAATGATTCACAAATTAATTATTACATTTTAAT
GAACGTACGAG
Run BLAST on NCBI

transcript from alignment at sc0006478:622..1487-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044924 ID=TCONS_00044924|Name=TCONS_00044924|organism=Clytia hemisphaerica|type=transcript|length=866bp|location=Sequence derived from alignment at sc0006478:622..1487- (Clytia hemisphaerica)
GAAAGGGAGATCGTCGATACTTTTTGAATGTTTACTGGCATCAAAGAAGT
GCTAATAATACGAATTTCAATGACCAATGTGATTTGACAGTACAGGCAAA
AAAACTGTAAGAATAATGTCACACAATAGTGCCATCCGCGAAATTAAGTC
CCCGCGAAATGTTTCAATTTTGGGGATTGGCCCAACCGTCAAATTTAATT
CCCGCAAGAGTTTGTCGCATTAAAGTACTATAAATATGTTTTTTTGCCTG
TACTGTCAAATCACATAGTTCGTCGTCTCGACAAAATTCAAGGTTTTTTT
TCTTCCAAATACTGTATACAAAATATACAAAAGCTTTTCTCAAGGTTTGT
CCTATTTGGCGTTTTTCAGGATTTTTATTGTTTTCTTTCACAGGTCTTGG
TCTAATTTATGTATTTTATTCATAACTAATATATTCAGTATGGCTGCAAA
ATAGAAGAACAAATGAAATCTGAAAAAGCTTTTCTTATTTTTGTCCATTC
TTTTACCAAAGGAAGAAGTAACGGATCCAGGCAAGAAACAGAACAATCCA
CCCGTCAAATTCTACAAAGGAAAACAGCGAGCGAAAAAGAAACGAAGACA
AAGAGCTGGCTTCTAATTGCATATACAGAATCATAAGTAATTAATAATAA
AGAACAAGTAAAATAAAATTTTAGAAAATATTTCGCTGTCACCATTTGTT
CATGTTTGTTGTGAAGCAACAACTTTTATGAAAGAACGTTTAAATCACTA
TATTTTGAGACGTTTTACTATTGATTTTCAGGCTCGGAAAAAGGGTGTTT
AGGGAGCAAAAATTGGTTCCCTGAATGATTCACAAATTAATTATTACATT
TTAATGAACGTACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028521XLOC_028521Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044924-exon-sc0006478-1575043694:1382..1487TCONS_00044924-exon-sc0006478-1575043694:1382..1487Clytia hemisphaericaexon
TCONS_00044924-exon-sc0006478-1575043694:622..976TCONS_00044924-exon-sc0006478-1575043694:622..976Clytia hemisphaericaexon
TCONS_00044924-exon-sc0006478-1510915933:1382..1487TCONS_00044924-exon-sc0006478-1510915933:1382..1487Clytia hemisphaericaexon
TCONS_00044924-exon-sc0006478-1510915933:622..976TCONS_00044924-exon-sc0006478-1510915933:622..976Clytia hemisphaericaexon
TCONS_00044924-exon-sc0006478-1491911889:1382..1487TCONS_00044924-exon-sc0006478-1491911889:1382..1487Clytia hemisphaericaexon
TCONS_00044924-exon-sc0006478-1491911889:622..976TCONS_00044924-exon-sc0006478-1491911889:622..976Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006478supercontigsc0006478:622..1487 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.140785	0	0	0.155952	0.379712	1.20021	0.98244	0.677804	0.35591	0.293901	0.713169	0	0.374526	0.194474	0.0799422	0	0.634119	0.433301	0.448972	0	0.272237	0	0.161421	0	1.35562	0.935713	0	0.412043	0.31252	0.159204
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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