TCONS_00044912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044912
Unique NameTCONS_00044912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length759

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044912 ID=TCONS_00044912|Name=TCONS_00044912|organism=Clytia hemisphaerica|type=transcript|length=759bp
tcaaaacgaggcaagtgatgttcgaaacgtaatttatgaaaagcttGCAA
AGgtatgcaaaacaaatcaaaatttgtGCGAGTCAAAATCATAAAGATAC
ATCAGATGTTTACTGTTAGACTTGCGCTTCAGCAGTCctcaaacacaccc
ttacattTCCAAGGTATCGAAAagcctacccttaagggcggcacatgccc
TGGGCCAGACCATCATGAGCGCCCCCATCCGGGACTTTTAACATCCCCTG
TGTGTGTTACAGACCTGGCGAGACTCCCAGTCCACTAgaatatttggcaa
aaatttcccCTATGTGGAAAAATACAACACAATTTCAGcctttcgtgaaa
atttactttatttttatcCCAtttaaattcaatggaaaatatTGCAACCC
GACTGGATTTTTTGACCTGAgagcaatagaatttctttCGCTGTTTTCAT
CTCCACTGTGGAAGAAGTtccatcggggctgtgagacaggggtgtaattt
tGTATACATTTTAAAGGAAATGTTAAAAACAACGAAGAATCGCCCTGAGA
GCCAGGCGGGTAATATATTTTTGGTGTGCGAACGAATATTCTTGGaggaa
atttgagaatttttttttataagaaccaggaGATTTTCGATAAGGCTTGT
CTGTTCTTCTTTTTGTGGAAcattgagcctcaaattgtttttaCCCTGTT
CTTATTCATGGggtttaaaactttaaattgcttgaaattgagttgctcca
ggctcagca
Run BLAST on NCBI

transcript from alignment at sc0006453:937..1695

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044912 ID=TCONS_00044912|Name=TCONS_00044912|organism=Clytia hemisphaerica|type=transcript|length=759bp|location=Sequence derived from alignment at sc0006453:937..1695 (Clytia hemisphaerica)
tgctgagcctggagcaactcaatttcaagcaatttaaagttttaaaccCC
ATGAATAAGAACAGGGtaaaaacaatttgaggctcaatgTTCCACAAAAA
GAAGAACAGACAAGCCTTATCGAAAATCtcctggttcttataaaaaaaaa
ttctcaaatttcctCCAAGAATATTCGTTCGCACACCAAAAATATATTAC
CCGCCTGGCTCTCAGGGCGATTCTTCGTTGTTTTTAACATTTCCTTTAAA
ATGTATACaaaattacacccctgtctcacagccccgatggaACTTCTTCC
ACAGTGGAGATGAAAACAGCGaaagaaattctattgctcTCAGGTCAAAA
AATCCAGTCGGGTTGCAatattttccattgaatttaaaTGGgataaaaat
aaagtaaattttcacgaaaggCTGAAATTGTGTTGTATTTTTCCACATAG
gggaaatttttgccaaatattcTAGTGGACTGGGAGTCTCGCCAGGTCTG
TAACACACACAGGGGATGTTAAAAGTCCCGGATGGGGGCGCTCATGATGG
TCTGGCCCAgggcatgtgccgcccttaagggtaggctTTTCGATACCTTG
GAaatgtaagggtgtgtttgagGACTGCTGAAGCGCAAGTCTAACAGTAA
ACATCTGATGTATCTTTATGATTTTGACTCGCacaaattttgatttgttt
tgcatacCTTTGCaagcttttcataaattacgtttcgaacatcacttgcc
tcgttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028510XLOC_028510Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044912-exon-sc0006453-1491911889:937..1695TCONS_00044912-exon-sc0006453-1491911889:937..1695Clytia hemisphaericaexon
TCONS_00044912-exon-sc0006453-1510915933:937..1695TCONS_00044912-exon-sc0006453-1510915933:937..1695Clytia hemisphaericaexon
TCONS_00044912-exon-sc0006453-1575043694:937..1695TCONS_00044912-exon-sc0006453-1575043694:937..1695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006453supercontigsc0006453:937..1695 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0629025	0	0	0	0	0	0	0.0543571	0.0673301	0	0.04296	0.343202	0.222762	0	0	0	0.0992654	0	0	0	0.0912614	0	0	2.14694	1.42162	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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