|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044879 ID=TCONS_00044879|Name=TCONS_00044879|organism=Clytia hemisphaerica|type=transcript|length=885bp
CAAAAAGAGGTGAATTGGTCACTACCATCGGTCGACTTTCAACTGAATGG
TCCTTGAGTTTNAACAATTTTCTTTTCCATTAGCAATCAAACCAAAAAGA
GGTGAATTGGTCACTACCATCGGTCGACTTTCAACTGAATGGTCCTTGAG
TTTGGATATCAAAATTCTGAATCCTCAGACGGCAATATATACGACTTTCG
CTCAATTAAGTATTGGTGAAAATTTGGTGAACCACGGAGATCGTACACCC
CTTCTGCACTTGAGGAACGATTTGGGGAAAATCAAATTGGTCATATGTAC
AAGTCTAAATGACGATTTAAACTATATTTTCACCTGGGAAGAACCGCTTA
CTATTGGTCAAAGATACCATCTAGAAATCAAACAACGCTATGTGAGCGGT
GGCAATTATCGTTTCTTTGTTTTAGTGAATGGTGTTGAAATTCACTCTGT
GGCAAATGGAAAAGCCAGACAATTTTATGGCGTGAAGTTTTATCTCTCTT
CGCCGTGGAATGAAGCGAGTGATGTGGAAATTTATGATTTAAAGCATACT
aactttttctgaaatttctagtTTCAGCGCTCTTGCGTTTaaaacacccc
cccccttcTCAATTGAATTCAAATCTCCAGCCTTAAAAAACacgggaata
tcaatcccatcGAGTTCCAGTGCGTTATTCTTAACCCCATCGGCTGAAAA
AATCTTATCGtatctgtgagaagggtgtgtTTGTAGGGAGTGGTTTAAAG
AGCTTCAATTTCGGCGTCATTGCTTCTATTGGGACAGatcatttattttg
aaactgatttaCATTTAATTTTAATGATGGTTATATCTgttttatcggcg
atccaaaaaatatctgcaatctgattgggtAAAAA Run BLAST on NCBI protein sequence of TCONS_00044879-protein >TCONS_00044879-protein ID=TCONS_00044879-protein|Name=TCONS_00044879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MVLEFXQFSFPLAIKPKRGELVTTIGRLSTEWSLSLDIKILNPQTAIYTT
FAQLSIGENLVNHGDRTPLLHLRNDLGKIKLVICTSLNDDLNYIFTWEEP
LTIGQRYHLEIKQRYVSGGNYRFFVLVNGVEIHSVANGKARQFYGVKFYL
SSPWNEASDVEIYDLKHTNFF Run BLAST on NCBI transcript from alignment at sc0006376:1..885 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044879 ID=TCONS_00044879|Name=TCONS_00044879|organism=Clytia hemisphaerica|type=transcript|length=885bp|location=Sequence derived from alignment at sc0006376:1..885 (Clytia hemisphaerica)
TTTTTacccaatcagattgcagatattttttggatcgccgataaaacAGA
TATAACCATCATTAAAATTAAATGtaaatcagtttcaaaataaatgatCT
GTCCCAATAGAAGCAATGACGCCGAAATTGAAGCTCTTTAAACCACTCCC
TACAAacacacccttctcacagataCGATAAGATTTTTTCAGCCGATGGG
GTTAAGAATAACGCACTGGAACTCgatgggattgatattcccgtGTTTTT
TAAGGCTGGAGATTTGAATTCAATTGAgaagggggggggtgttttAAACG
CAAGAGCGCTGAAactagaaatttcagaaaaagttAGTATGCTTTAAATC
ATAAATTTCCACATCACTCGCTTCATTCCACGGCGAAGAGAGATAAAACT
TCACGCCATAAAATTGTCTGGCTTTTCCATTTGCCACAGAGTGAATTTCA
ACACCATTCACTAAAACAAAGAAACGATAATTGCCACCGCTCACATAGCG
TTGTTTGATTTCTAGATGGTATCTTTGACCAATAGTAAGCGGTTCTTCCC
AGGTGAAAATATAGTTTAAATCGTCATTTAGACTTGTACATATGACCAAT
TTGATTTTCCCCAAATCGTTCCTCAAGTGCAGAAGGGGTGTACGATCTCC
GTGGTTCACCAAATTTTCACCAATACTTAATTGAGCGAAAGTCGTATATA
TTGCCGTCTGAGGATTCAGAATTTTGATATCCAAACTCAAGGACCATTCA
GTTGAAAGTCGACCGATGGTAGTGACCAATTCACCTCTTTTTGGTTTGAT
TGCTAATGGAAAAGAAAATTGTTNAAACTCAAGGACCATTCAGTTGAAAG
TCGACCGATGGTAGTGACCAATTCACCTCTTTTTG Coding sequence (CDS) from alignment at sc0006376:1..885 >TCONS_00044879 ID=TCONS_00044879|Name=TCONS_00044879|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at sc0006376:1..885 (Clytia hemisphaerica)
tcagaaaaagttAGTATGCTTTAAATCATAAATTTCCACATCACTCGCTT
CATTCCACGGCGAAGAGAGATAAAACTTCACGCCATAAAATTGTCTGGCT
TTTCCATTTGCCACAGAGTGAATTTCAACACCATTCACTAAAACAAAGAA
ACGATAATTGCCACCGCTCACATAGCGTTGTTTGATTTCTAGATGGTATC
TTTGACCAATAGTAAGCGGTTCTTCCCAGGTGAAAATATAGTTTAAATCG
TCATTTAGACTTGTACATATGACCAATTTGATTTTCCCCAAATCGTTCCT
CAAGTGCAGAAGGGGTGTACGATCTCCGTGGTTCACCAAATTTTCACCAA
TACTTAATTGAGCGAAAGTCGTATATATTGCCGTCTGAGGATTCAGAATT
TTGATATCCAAACTCAAGGACCATTCAGTTGAAAGTCGACCGATGGTAGT
GACCAATTCACCTCTTTTTGGTTTGATTGCTAATGGAAAAGAAAATTGTT
NAAACTCAAGGACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044879-exon-sc0006376-1491911889:1..885 | TCONS_00044879-exon-sc0006376-1491911889:1..885 | Clytia hemisphaerica | exon |
| TCONS_00044879-exon-sc0006376-1510915933:1..885 | TCONS_00044879-exon-sc0006376-1510915933:1..885 | Clytia hemisphaerica | exon |
| TCONS_00044879-exon-sc0006376-1575043694:1..885 | TCONS_00044879-exon-sc0006376-1575043694:1..885 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006376 | supercontig | sc0006376:1..885 . |
Blast
The following BLAST results are available for this feature:
|
