TCONS_00044865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044865
Unique NameTCONS_00044865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044865 ID=TCONS_00044865|Name=TCONS_00044865|organism=Clytia hemisphaerica|type=transcript|length=273bp
AGCAAGTTGATGGTGGGATATCCACTCGACaatgtttgaaatatttcgaa
GACTGGGTCCGAaaatggaaagaagaaaaacaattcACTTTCGATCAAAA
TCTGAATTGTAAAAAGAGATGCGCGCTTGCCACATGGACAGATTGGGATT
TGAACGTTTGTTTGAAGTACGAATGCAAACGAAAGGGTATCCAATATCCA
AACTATATGAAAAGTTGGATcgatttaaaaaagacttaCAAGGTAAGAAA
TCATTTATAATTGTGTAAAAGTA
Run BLAST on NCBI

transcript from alignment at sc0006351:4..1158-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044865 ID=TCONS_00044865|Name=TCONS_00044865|organism=Clytia hemisphaerica|type=transcript|length=1155bp|location=Sequence derived from alignment at sc0006351:4..1158- (Clytia hemisphaerica)
AGCAAGTTGATGGTGGGATATCCACTCGACAATGTTTGAAATATTTCGAA
GACTGGGTCCGAAAATGGAAAGAAGAAAAACAATTCACTTTCGATCAAAA
TCTGAATTGTAAAAAGAGATGCGCGCTTGCCACATGGACAGGTACTCGAT
TTCGTGAGATAAAAAATTTCGAAATTTCACGTTTTGCGCACTATTATTGA
AATATCGTCTCCAATTTTCTAAGCTTTTATATCCGGGTTAAGCGATGACT
TCACCGTGAATTATGACGCCCCCTTCTTACAAACCCACTGGAAAAGTTGG
CAAAAATATCGTTCCCAGTGGAAAATTATACTCCAATTTTTTGTACTTGC
TAAAAATAATCATAGAACAAATCCTCAATGCAAAATATTATGTTTTTTTC
CATCCCCACAGAATTTATTGGCTTGAAAACAATAAAATTTAGATTCCAAG
CCATAGAAAAAAATGGCAATATCAATTCAATCTCCATCGAGTTTCAGTAC
GTTTTTTTACCCCAATGGCTGAAAAAATTCTACCGGGTCTTTGTGAGAAG
GGGGCGTTATAATGGTGGAATCTGGACCCTTCTGAGCAATTTCAAAAGAC
AATCTACTTCTCATTGCATTTTTAACCTAATAGGAACCGCAGTGCCAATT
TTCAGCCAATAAATACAATTTTTTAACCATATGAAATTGTCTGAATAGAG
TACTCTTAGGTTCCAAATAAACGGGGCGGGGGAGGGGTGGTTTGGAATAT
TTTCAAAATTTCAAACAAACAAACAGGGGGGCCTAATTGCCGGGGGGTTT
TGGAAATTGTACTTGCGAAAACCCAAAATAAGTTGAATATAGGCTAAAAT
CAAACTATTTAGAGCGGAATATAAGGGACCTTCTCCTTGAAAGCTCAAAA
AATTCTTGAAAAATAATAAACGCGGGGTCCTAATAAGGTCTGGGGGGTTT
TCGAAAAATTAACAAGCGGGGGCAGGGCGTTTATTTGGAACCTGACAGTA
ACGTTTTCATTCTCGTGTCTTAGATTGGGATTTGAACGTTTGTTTGAAGT
ACGAATGCAAACGAAAGGGTATCCAATATCCAAACTATATGAAAAGTTGG
ATCGATTTAAAAAAGACTTACAAGGTAAGAAATCATTTATAATTGTGTAA
AAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028468XLOC_028468Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044865-exon-sc0006351-1575043694:1018..1158TCONS_00044865-exon-sc0006351-1575043694:1018..1158Clytia hemisphaericaexon
TCONS_00044865-exon-sc0006351-1575043694:4..135TCONS_00044865-exon-sc0006351-1575043694:4..135Clytia hemisphaericaexon
TCONS_00044865-exon-sc0006351-1510915933:1018..1158TCONS_00044865-exon-sc0006351-1510915933:1018..1158Clytia hemisphaericaexon
TCONS_00044865-exon-sc0006351-1510915933:4..135TCONS_00044865-exon-sc0006351-1510915933:4..135Clytia hemisphaericaexon
TCONS_00044865-exon-sc0006351-1491911889:1018..1158TCONS_00044865-exon-sc0006351-1491911889:1018..1158Clytia hemisphaericaexon
TCONS_00044865-exon-sc0006351-1491911889:4..135TCONS_00044865-exon-sc0006351-1491911889:4..135Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006351supercontigsc0006351:4..1158 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.851998	2.44989	1.1519	0	0	2.0252	0	0	1.75197	1.37381	2.6645	0	1.19414	0	0.55013	0.958043	3.64405	1.57117	0.793132	1.33865	0	0.957404	0	0.152552	0	2.37018	0	0	0	1.73636
Blast
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BLAST of TCONS_00044865 vs. Swiss-Prot (Human)
Match: ERI2 (ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.075e-20
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 3 
Query:    3 QVDGGISTRQCLKYFEDWVRKWKEEKQFTFDQNLNCK-----KRCALATWTDWDLNVCLKYECKRKGIQYPNYMKSWIDLKKTYKV 245
            QVD G+  + CL  F  W+ K +++K   F   ++       K CA  TW+DWDL VCL+YECKRK +  P ++ SWIDL+ TYK+
Sbjct:  103 QVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKL 188
The following BLAST results are available for this feature:
BLAST of TCONS_00044865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERI23.075e-2044.19ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=... [more]
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