TCONS_00044862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044862
Unique NameTCONS_00044862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length541

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044862 ID=TCONS_00044862|Name=TCONS_00044862|organism=Clytia hemisphaerica|type=transcript|length=541bp
GTCTTGTTCTGGTATTATTGCCAATCTCATCAGCTAAGGAGGACTGTCAA
GATGCATCACCTTTATGTAAACTGATTGCTACCAGATGCAACACCATATT
CTCTCGTTCATGTAAGAAAACATGCGGNAGGAGGACTGTCAAGATGCATC
ACCTTTATGTAAACTGATTGCTACCAGATGCAACACCATATTCTCTCGTT
CATGTAAGAAAACATGCGGCAGATGTAACTTGGTCGAAAACAGTAATAAT
CGCATAGCTAACTTGAAAGTTTCAAATAATGGATTTAAAAAGAACCAAAG
CAATCGAGGTCAAAGATTACAGCAACAAAAAGCGAGAACTGAAAACCAAA
AATTGCaacaaatgatgaaaagaaaacttcgagtggaaaaaaaaagaaaa
gaacaacaAAGGAGAAGAGCTGAAAAGAAACGTATTAAGAGAAaaaacca
aattaaaaaaattaaattgagaaaattttcgaGAGGGACAATGATATATC
TACCTAGGGGACCATACGTAATAAGACGGCATAAAAAACAA
Run BLAST on NCBI

protein sequence of TCONS_00044862-protein

>TCONS_00044862-protein ID=TCONS_00044862-protein|Name=TCONS_00044862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MRXEDCQDASPLCKLIATRCNTIFSRSCKKTCGRCNLVENSNNRIANLKV
SNNGFKKNQSNRGQRLQQQKARTENQKLQQMMKRKLRVEKKRKEQQRRRA
EKKRIKRKNQIKKIKLRKFSRGTMIYLPRGPYVIRRHKKQ
Run BLAST on NCBI

transcript from alignment at sc0006342:60..1919-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044862 ID=TCONS_00044862|Name=TCONS_00044862|organism=Clytia hemisphaerica|type=transcript|length=1860bp|location=Sequence derived from alignment at sc0006342:60..1919- (Clytia hemisphaerica)
GTCTTGTTCTGGTATTATTGCCAATCTCATCAGGTAAGAATCTATTCAGC
TATTAAGAAGGGAGAGTTCACGAGTGGCGGAGGAGCGGAGTAACACCTTT
TCTCTGGCGGACTGGCGGAATTCGACGAAAAATTGGACTGTTTCAGTTCG
GATAAACCAAGCGTAGCAAAAAATCGGTCGGAATTTCGGAATAGGGAAAA
AATATCTGTTTTTTATGAGTTTTTGACGGAAATCTGGGATTTCAATGAAA
TTTTCGGTGGCGGATTTTTGTGCTTGAAATTGACGATGTGGCGGAATCGT
ATGTACCACTTTAAAAACTCCCCCGTTCTAGTCAAAGATGCATTGTTAAT
TTGGTTGCCCTCCTTTATTAACCTACTAAGGTTCCAAATAAAACGGCCTC
CTGCTTGTTAATTTTTCGGAAATTTTCTTAACCCCCGAACCTTATTAGGG
TCCTCCCTCCCCCCGTTTATCAATTTTTAAGAATATTTTCAGCTGTCAAA
AAGAAGGCCCCCTATTTTGCCCTAAATAGCCTTATTTTAGCCTATACTTA
TCTTATTTTTGGGTTTTCAGAAGTACGATTTCCAACCCCCCGGCAATTAG
GTCCCCTCCCCGTTCATTAAAATCTCGAAAATTTTATTTGGAAGTACATG
TAAAATACAGACAATTCTTGATCGTGAAATTATTGTTGATTCTATTTTCT
TTATATAGCTAAGGAGGACTGTCAAGATGCATCACCTTTATGTAAACTGA
TTGCTACCAGATGCAACACCATATTCTCTCGTTCATGTAAGAAAACATGC
GGNAGGAGGACTGTCAAGATGCATCACCTTTATGTAAACTGATTGCTACC
AGATGCAACACCATATTCTCTCGTTCATGTAAGAAAACATGCGGCAGATG
TAACTTGGTCGAAAACAGTAATAATCGCATAGCTAACTTGAAAGGTAAGG
AAAGGTATTACATAACAAAACTTTTTTACTGGAAATAAATTTTGAAAATG
CACACACTTTTCACCATTTTGTCATTCGTGCCTTTCATTAAAAAATTCTT
AAATTCTTTTCTTTTTCTTTATTGAAACAAAGACACGTGTACGCTACGAA
CATTATTACAAAACATTACTTAAACATAAAATATAGTCCCTCCCCCGCTA
GGAACTAACGTTATATCGCCAGAGGTACTAGACTAAAAACAAAAATAAAT
GAGTAAATAATAATAAGAAACAAAAACAGAAATCTTGGAGAAGGAAGCTA
CAGTTGTTAGGTAAAAGCCTAAAATAAAGCACCACTAAACCTTCCAGTTT
CGTTAAGAAATTCAACAACAAAACAAAGAATAGATTTATTTAGAATTGAA
GTCAAACTTTCATCCCAATATAATAAAAGTTTCAATAAATTCGTTTCATC
AAGTATGACTGGAGGCGAATAATCACATTGCTAAATGAAATCAAATTGAC
ATACAGTAGAGGTTTCTTGTGACGTAATTTTAAACCCTATACTACTTGAG
GTTTAAGAAAGTGGCAAAGTCATTTACTCAATTTTAGAAGACATAACCTG
GTGATAACGTTTATAAACTCTGCTCTTGTTACGTTTAGTTTCAAATAATG
GATTTAAAAAGAACCAAAGCAATCGAGGTCAAAGATTACAGCAACAAAAA
GCGAGAACTGAAAACCAAAAATTGCAACAAATGATGAAAAGAAAACTTCG
AGTGGAAAAAAAAAGAAAAGAACAACAAAGGAGAAGAGCTGAAAAGAAAC
GTATTAAGAGAAAAAACCAAATTAAAAAAATTAAATTGAGAAAATTTTCG
AGAGGGACAATGATATATCTACCTAGGGGACCATACGTAATAAGACGGCA
TAAAAAACAA

Coding sequence (CDS) from alignment at sc0006342:60..1919-

>TCONS_00044862 ID=TCONS_00044862|Name=TCONS_00044862|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0006342:60..1919- (Clytia hemisphaerica)
TTTCAAATAATGGATTTAAAAAGAACCAAAGCAATCGAGGTCAAAGATTA
CAGCAACAAAAAGCGAGAACTGAAAACCAAAAATTGCAACAAATGATGAA
AAGAAAACTTCGAGTGGAAAAAAAAAGAAAAGAACAACAAAGGAGAAGAG
CTGAAAAGAAACGTATTAAGAGAAAAAACCAAATTAAAAAAATTAAATTG
AGAAAATTTTCGAGAGGGACAATGATATATCTACCTAGGGGACCATACGT
AATAAGACGGCATAAAAAACAAATGCGGNAGGAGGACTGTCAAGATGCAT
CACCTTTATGTAAACTGATTGCTACCAGATGCAACACCATATTCTCTCGT
TCATGTAAGAAAACATGCGGCAGATGTAACTTGGTCGAAAACAGTAATAA
TCGCATAGCTAACTTGAAAGTTTCAAATAATGGATTTAAAAAGAACCAAA
GCAATCGAGGTCAAAGATTACAGCAACAAAAAGCGAGAACTGAAAACCAA
AAATTGCAACAAATGATGAAAAGAAAACTTCGAGTGGAAAAAAAAAGAAA
AGAACAACAAAGGAGAAGAGCTGAAAAGAAACGTATTAAGAGAAAAAACC
AAATTAAAAAAATTAAATTGAGAAAATTTTCGAGAGGGACAATGATATAT
CTACCTAGGGGACCATACGTAATAAGACGGCATAAAAAACAAATGCGGNA
GGAGGACTGTCAAGATGCATCACCTTTATGTAAACTGATTGCTACCAGAT
GCAACACCATATTCTCTCGTTCATGTAAGAAAACATGCGGCAGATGTAAC
TTGGTCGAAAACAGTAATAATCGCATAGCTAACTTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028465XLOC_028465Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044862-proteinTCONS_00044862-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044862-exon-sc0006342-1575043694:1887..1919TCONS_00044862-exon-sc0006342-1575043694:1887..1919Clytia hemisphaericaexon
TCONS_00044862-exon-sc0006342-1575043694:976..1211TCONS_00044862-exon-sc0006342-1575043694:976..1211Clytia hemisphaericaexon
TCONS_00044862-exon-sc0006342-1575043694:60..331TCONS_00044862-exon-sc0006342-1575043694:60..331Clytia hemisphaericaexon
TCONS_00044862-exon-sc0006342-1510915933:1887..1919TCONS_00044862-exon-sc0006342-1510915933:1887..1919Clytia hemisphaericaexon
TCONS_00044862-exon-sc0006342-1510915933:976..1211TCONS_00044862-exon-sc0006342-1510915933:976..1211Clytia hemisphaericaexon
TCONS_00044862-exon-sc0006342-1510915933:60..331TCONS_00044862-exon-sc0006342-1510915933:60..331Clytia hemisphaericaexon
TCONS_00044862-exon-sc0006342-1491911889:1887..1919TCONS_00044862-exon-sc0006342-1491911889:1887..1919Clytia hemisphaericaexon
TCONS_00044862-exon-sc0006342-1491911889:976..1211TCONS_00044862-exon-sc0006342-1491911889:976..1211Clytia hemisphaericaexon
TCONS_00044862-exon-sc0006342-1491911889:60..331TCONS_00044862-exon-sc0006342-1491911889:60..331Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006342supercontigsc0006342:60..1919 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.854885	0.729442	0.241986	0.82861	0.57643	1.02488	0.686931	0.643097	0.180099	0.223082	0.108264	0.427012	0.213209	0.442839	0.728148	0.651179	0	0.328891	0	0.118869	0	0	0.122524	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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