TCONS_00044840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044840
Unique NameTCONS_00044840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044840 ID=TCONS_00044840|Name=TCONS_00044840|organism=Clytia hemisphaerica|type=transcript|length=255bp
AGGAAATTCGTCGTCTTGAAGATGAACTCGATGAATTGAAGAATAATTTG
gATTCAGTTGATGGAAACACAGAGAAAAAGgaCCAAATTATTGAAGATAA
AGAAAGCGAAATCCAAGCATTGACAAAGGAATTGAAAGACAAAGATGCGA
GACTTGAGAAGttccaaaaaacaaaacatgaaaatgaagaaagacTAAGC
AATGAgATAGAAGAATTAACGGCTTCATTAGAGTCAAAAGAAGTCAATTT
GAAGG
Run BLAST on NCBI

transcript from alignment at sc0006302:716..1857-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044840 ID=TCONS_00044840|Name=TCONS_00044840|organism=Clytia hemisphaerica|type=transcript|length=1142bp|location=Sequence derived from alignment at sc0006302:716..1857- (Clytia hemisphaerica)
AGGAAATTCGTCGTCTTGAAGATGAACTCGATGAATTGAAGAATAATTTG
GTATAATTTTTACTGCTATCAATTATTTTACTCTGCCACTGTTTGATTCT
TTTCTATAGTGTTGCAATACAATGTTTTATCTTTATTTTTCTCTTCTTTT
TTAGGATTCAGTTGATGGAAACACAGAGAAAAAGGTATTTGTACTTTCAT
TAATTATGTTTCTTTGTTTCCAACCACCTCAACAAACACATTGTAGATCA
CTCACAAACGTTTCTAACCAGGACAAACAAGTTTTTTCACTGCCTGTATA
AAAGATTTAACCAACACCTTACACAGAGTATTATTATTAAGTGTCTTTAT
TCTTTTTTTTAAGGACCAAATTATTGAAGATAAAGAAAGGTATAAACTTG
TTTCTTTTTCAATGTTGTTTTAAAATAGGGATAAGTAATGGCTATTACAC
GGTAACGAGTAAGATATGATTTATTTTTTGACTCAGGAGGATTAAATATA
GAAAAATGTGAACAAGAAAAAGATATTACATATTGTACGAGTAAAAGTTT
ATTCTGGTAAACTCACAGCCTTTTTCCTTTTGATGCGAAACTCCATAATT
TTATTGGCGTTTTGCTTTTATTTAGCGAAATCCAAGCATTGACAAAGGAA
TTGAAAGACAAAGATGCGAGACTTGAGGTTTGTTGATCATCACGTGAAAT
GTTTTTGTTGGTGGTCGTTTTGATTGAATTCATCCCTTTAAAGTTCCTTT
GTCTCTCCATCTTTTTGTTTTATAGAAGTTCCAAAAAACAAAACATGAAA
ATGAAGAAAGACTAAGCAATGAGGTAACATTTTTTGAAAATGTCCCTAAA
GTTGCTGTTCCCTTTCGTTTATCATACTTCGATTGAAATTTTAAACCCTA
CTCCTTCACTTTTTCGTCTAAAGGCCCTGGTAGAAACAATCAAATAAACT
GTTCAAAATTTCAATATAACGGGGACGCTCCAGTTATTGAGAGCTTGAAT
AGCCAAACAGATTCATTCGAGGGGTGAACCCTTATGATTTTGTTTAAATT
TCCAAAGGTGCTTTATTATCTTACCAAGTACTTCCATTTCCAGATAGAAG
AATTAACGGCTTCATTAGAGTCAAAAGAAGTCAATTTGAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028445XLOC_028445Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044840-exon-sc0006302-1575043694:1808..1857TCONS_00044840-exon-sc0006302-1575043694:1808..1857Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1575043694:1674..1703TCONS_00044840-exon-sc0006302-1575043694:1674..1703Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1575043694:1469..1494TCONS_00044840-exon-sc0006302-1575043694:1469..1494Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1575043694:1181..1232TCONS_00044840-exon-sc0006302-1575043694:1181..1232Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1575043694:1035..1082TCONS_00044840-exon-sc0006302-1575043694:1035..1082Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1575043694:716..764TCONS_00044840-exon-sc0006302-1575043694:716..764Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1510915933:1808..1857TCONS_00044840-exon-sc0006302-1510915933:1808..1857Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1510915933:1674..1703TCONS_00044840-exon-sc0006302-1510915933:1674..1703Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1510915933:1469..1494TCONS_00044840-exon-sc0006302-1510915933:1469..1494Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1510915933:1181..1232TCONS_00044840-exon-sc0006302-1510915933:1181..1232Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1510915933:1035..1082TCONS_00044840-exon-sc0006302-1510915933:1035..1082Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1510915933:716..764TCONS_00044840-exon-sc0006302-1510915933:716..764Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1491911889:1808..1857TCONS_00044840-exon-sc0006302-1491911889:1808..1857Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1491911889:1674..1703TCONS_00044840-exon-sc0006302-1491911889:1674..1703Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1491911889:1469..1494TCONS_00044840-exon-sc0006302-1491911889:1469..1494Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1491911889:1181..1232TCONS_00044840-exon-sc0006302-1491911889:1181..1232Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1491911889:1035..1082TCONS_00044840-exon-sc0006302-1491911889:1035..1082Clytia hemisphaericaexon
TCONS_00044840-exon-sc0006302-1491911889:716..764TCONS_00044840-exon-sc0006302-1491911889:716..764Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006302supercontigsc0006302:716..1857 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.83534	1.38245	0.802579	3.14079	6.69132	8.30904	4.5566	3.41266	2.98661	1.47976	0	1.41624	3.29997	0	0.4025	0.863888	0	2.72703	3.01403	0	0.685342	0	1.62547	2.21669	27.3976	28.527	0	0	0	0.801575
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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