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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044826 ID=TCONS_00044826|Name=TCONS_00044826|organism=Clytia hemisphaerica|type=transcript|length=357bp
GTATCACAAGTATTAACCATCCGGTAGATTTCAATGAAGAGCAACTTGAA
GATGAACTCGTACGCCGTGGTGTTGTCAACTTATTTGTCGCCATCTTCGT
CATACTTGCTCTTGCATTCGTACCCGCAAGTTTTGTTGTCTACTTAATCG
AAGATCGTGtttccaaatcaaaacatttacaATTGGTTAGCGGACTGAAT
CCTGTTGTTTATTGGTTGGCTAACTTCATTTGGGATCTGATCAACTACTT
GATACCTGCATTATGCTGTATCATCATTTTCTTCGCGTTCAACCAACAAG
CATATGTATCTGCACAAAATTTCCCTGCTACCTTCTGTCTACTTCTACTT
TATGGGT Run BLAST on NCBI protein sequence of TCONS_00044826-protein >TCONS_00044826-protein ID=TCONS_00044826-protein|Name=TCONS_00044826-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
ITSINHPVDFNEEQLEDELVRRGVVNLFVAIFVILALAFVPASFVVYLIE
DRVSKSKHLQLVSGLNPVVYWLANFIWDLINYLIPALCCIIIFFAFNQQA
YVSAQNFPATFCLLLLYG Run BLAST on NCBI transcript from alignment at sc0006284:26..2117- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044826 ID=TCONS_00044826|Name=TCONS_00044826|organism=Clytia hemisphaerica|type=transcript|length=2092bp|location=Sequence derived from alignment at sc0006284:26..2117- (Clytia hemisphaerica)
GTATCACAAGTATTAACCATCCGGTAGATTTCAATGAAGAGCAACTTGAA
GATGAACTCGTGTAAGTAATCACCAAAGTTTCGTTTAAAATCGCATCAGT
CCATTCGCGTCACCTATTCTAGACACTAACCTAGAGTTTACTTATGCTTT
CTCAAAAGTTCTATTTATCCTGAGACTATTAATTTGTCTGAGACGAGCAT
TTTAGAAAACGAGCATTATGGAGGAGTGTACTTTCCATTCATGTTTCAAT
AAATAGAATCTCCTCCACAGATTACATTTTACAAACTACTCGTTTCAGAC
GATTTTACCGTCTCAGTATAAATGGAACTAATGACATACTGTATCTGGTG
AAATTTGGAATAAACTCCACAGTTTATTTGAGACAGTCCGTTGTTTTCTT
TAAATAAGGGTCTTATTATTTTTGCCTTGAGAATAACGAATTCGATATAC
TGTACATACTTTGCTAAAATTTAGTCGCTATTTCAGGCCTAACAAACAGA
ACAAAATTAAAATCTCGCTCGTTCATTGTTCTTCTGTACAGACGCCGTGG
TGTTGTCAACTTATTTGTCGCCATCTTCGTCATACTTGCTCTTGCATTCG
TACCCGCAAGTTTTGTTGTCTACTTAATCGAAGATCGTGTTTCCAAATCA
AAACATTTACAATTGGTTAGCGGACTGAATCCTGTTGTTTATTGGTTGGC
TAACTTCATTTGGGATCTGGTAAGTAATCCATTGATTTTAAAGCCCCGAA
GGGGCTAGATTCGAAACTCTTGTATAGGAATTGTAGCCATTTATTTCCCG
TGGTTTTCACACAAATGATAGATTGAAAGTAAAATCCTTTACCAAATTTT
GACAAATATGGCGCTTAAAAAAAGAGCTAGATTCAATTCATCAATTCATC
ATTCTATATGCAGCCTAATCTTTATAATGCTTCACTTTTTCTTGCTTGAG
AAAGTTTGAAGATTCCTCTCTAGCCACTTTTTCGAGGCTTTAAACTGACC
TGATGGGTGACGTAGCCTTTGTGTTGTGAGAGGGTCATAACACCCTCTCC
ATTGGTTCAGGTCCTAATCCTTCTCACAGACCAACTGGGACCCCTTCCCA
CTGGAAAAATTAGTTAAATATCGTCCCCGATGGAAAATTATCCTCCAAGT
CCTCGCTGAAAATATTAAAATAAACCAATCCTCACTACAAAATATTTACA
ATTTTTCCCAACCCCTATTTGATTTTCTGACTTGAAAACGAAATAATTGA
ACCCCCAGCCATAAGAAATATTGGAATATCAATCCCTTTCGAGTTTCGGT
CCGTTATTTTTATCCCCACTGACTGAAGAAATCATACATGATGTATTAAC
CCTTTAAGTGCCAATGTCGTATATATCAGACATGGGCTATGTAGGAGGGC
GAAGCCCTCCTGTAATGCCCAATTTGAGTTAGAAATCGTCATTTTGGTCT
AACTCGTAGGAATCGGATATTGGGCTTCATGGTCAAGCAAAAAAAAAAAA
TCAAAAATGAGTCTTTTCAACGAGATTTTCAGCTAAAAAGTCAAAAAAAT
GCAAAAATTTGATAAAAATCCACTTTTTTACGATTTTGACCGTTTTTTGA
CCATTTTTGGTATACGCGAGTGATCCAAAAACCTCCAAATCTGGCCCTGA
TTAACTGGATTCTGTCTTCCAGCGAATTAGTTTGAAGTTTTAACATTTGG
CACCTTTCTATCATTCAGTCAGGTCCGCGCTGCTGCTTTAATTTCCCATA
CTTACCCCTCCCCCTTAGCCGCCTATCCCGCCCTACCTAAATCGGGCGGC
GCCGAAATCGCCTAAAGAAAGAGGAGACTCAAGATTATCCAACGGACTAT
AAACGAGCTCCTAACTCCTTCTAGATCCGTAGGTTTAAGCCTTTAAAGTT
TGAACTAGCGATTTTCTTTAAAAATCTTAGAAAAAAATGACAGTGGCACT
TAAACTTTTACTTCATTATTCTAGATCAACTACTTGATACCTGCATTATG
CTGTATCATCATTTTCTTCGCGTTCAACCAACAAGCATATGTATCTGCAC
AAAATTTCCCTGCTACCTTCTGTCTACTTCTACTTTATGGGT Coding sequence (CDS) from alignment at sc0006284:26..2117- >TCONS_00044826 ID=TCONS_00044826|Name=TCONS_00044826|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0006284:26..2117- (Clytia hemisphaerica)
ATCAACTACTTGATACCTGCATTATGCTGTATCATCATTTTCTTCGCGTT
CAACCAACAAGCATATGTATCTGCACAAAATTTCCCTGCTACCTTCTGTC
TACTTCTACTTTATGGGACGCCGTGGTGTTGTCAACTTATTTGTCGCCAT
CTTCGTCATACTTGCTCTTGCATTCGTACCCGCAAGTTTTGTTGTCTACT
TAATCGAAGATCGTGTTTCCAAATCAAAACATTTACAATTGGTTAGCGGA
CTGAATCCTGTTGTTTATTGGTTGGCTAACTTCATTTGGGATCTGATCAC
AAGTATTAACCATCCGGTAGATTTCAATGAAGAGCAACTTGAAGATGAAC
TCGTATCAACTACTTGATACCTGCATTATGCTGTATCATCATTTTCTTCG
CGTTCAACCAACAAGCATATGTATCTGCACAAAATTTCCCTGCTACCTTC
TGTCTACTTCTACTTTATGGGACGCCGTGGTGTTGTCAACTTATTTGTCG
CCATCTTCGTCATACTTGCTCTTGCATTCGTACCCGCAAGTTTTGTTGTC
TACTTAATCGAAGATCGTGTTTCCAAATCAAAACATTTACAATTGGTTAG
CGGACTGAATCCTGTTGTTTATTGGTTGGCTAACTTCATTTGGGATCTGA
TCACAAGTATTAACCATCCGGTAGATTTCAATGAAGAGCAACTTGAAGAT
GAACTCGTATCAACTACTTGATACCTGCATTATGCTGTATCATCATTTTC
TTCGCGTTCAACCAACAAGCATATGTATCTGCACAAAATTTCCCTGCTAC
CTTCTGTCTACTTCTACTTTATGGGACGCCGTGGTGTTGTCAACTTATTT
GTCGCCATCTTCGTCATACTTGCTCTTGCATTCGTACCCGCAAGTTTTGT
TGTCTACTTAATCGAAGATCGTGTTTCCAAATCAAAACATTTACAATTGG
TTAGCGGACTGAATCCTGTTGTTTATTGGTTGGCTAACTTCATTTGGGAT
CTGATCACAAGTATTAACCATCCGGTAGATTTCAATGAAGAGCAACTTGA
AGATGAACTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044826-exon-sc0006284-1575043694:2057..2117 | TCONS_00044826-exon-sc0006284-1575043694:2057..2117 | Clytia hemisphaerica | exon |
| TCONS_00044826-exon-sc0006284-1575043694:1399..1576 | TCONS_00044826-exon-sc0006284-1575043694:1399..1576 | Clytia hemisphaerica | exon |
| TCONS_00044826-exon-sc0006284-1575043694:26..143 | TCONS_00044826-exon-sc0006284-1575043694:26..143 | Clytia hemisphaerica | exon |
| TCONS_00044826-exon-sc0006284-1510915933:2057..2117 | TCONS_00044826-exon-sc0006284-1510915933:2057..2117 | Clytia hemisphaerica | exon |
| TCONS_00044826-exon-sc0006284-1510915933:1399..1576 | TCONS_00044826-exon-sc0006284-1510915933:1399..1576 | Clytia hemisphaerica | exon |
| TCONS_00044826-exon-sc0006284-1510915933:26..143 | TCONS_00044826-exon-sc0006284-1510915933:26..143 | Clytia hemisphaerica | exon |
| TCONS_00044826-exon-sc0006284-1491911889:2057..2117 | TCONS_00044826-exon-sc0006284-1491911889:2057..2117 | Clytia hemisphaerica | exon |
| TCONS_00044826-exon-sc0006284-1491911889:1399..1576 | TCONS_00044826-exon-sc0006284-1491911889:1399..1576 | Clytia hemisphaerica | exon |
| TCONS_00044826-exon-sc0006284-1491911889:26..143 | TCONS_00044826-exon-sc0006284-1491911889:26..143 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006284 | supercontig | sc0006284:26..2117 - |
Blast
BLAST of TCONS_00044826 vs. Swiss-Prot (Human)
Match: ABCA2 (ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3) HSP 1 Score: 147.132 bits (370), Expect = 7.328e-41 Identity = 61/118 (51.69%), Postives = 88/118 (74.58%), Query Frame = 3
Query: 3 ITSINHPVDFNEEQLEDELVRRGVVNLFVAIFVILALAFVPASFVVYLIEDRVSKSKHLQLVSGLNPVVYWLANFIWDLINYLIPALCCIIIFFAFNQQAYVSAQNFPATFCLLLLYG 356
IT NHP++ L + + +G ++ +AIF+I+A++FVPASFVV+L+ ++ +K+KHLQ VSG NP++YWLAN++WD++NYL+PA CC+II F F+ AY S NFPA L LLYG
Sbjct: 1767 ITVTNHPMNKTSASLSLDYLLQGT-DVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPIIYWLANYVWDMLNYLVPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYG 1883
The following BLAST results are available for this feature:
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