TCONS_00044816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044816
Unique NameTCONS_00044816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044816 ID=TCONS_00044816|Name=TCONS_00044816|organism=Clytia hemisphaerica|type=transcript|length=610bp
GTGaatggttggtattttacagaccggtccgtATTTTACccaaaatgctc
actttcagcataaccGATTGTCTCATGTTGCTGAGATTTTGGTTGCAagc
ttgtattatcaatgcctaacACTTGTCAAAATCTCAGGTCCAAAGCATTT
TCCAATCTGTAGATGCAGTATCCTAGGGCTGTTTAGGCAAAAAAGGCAAT
TTTgtccggtctgtaaaatacacgataccAACAGGTGGCAAATTTTGACC
TACTGCCCCAAAAATGTATGTCACGTGGAGTTGCCTcgcaaattttgaga
aaaaaatcaaagtgaaaaaaagttagaggatagaacgatgacgtcatcag
gtgacTCAATGATGCcgaaattttaaccaaagatgtcaATTCATATTTGG
TACACACTTGCAAAATTATAAGTCGATcagataaatatttcaaaaggcAT
CAAAAAATTCGTTTAGACTACCCCCAAGATAGAAGGGCTAAGGTATCAAT
CTGTCACAGACCATAACTTATATCGAGAAATAATTTCGGGAAGTTTTAAA
TTTATCAAAGGTTACAGCAGGGCCCGCGccacgattttgaaagtgagggg
gccaacaaaa
Run BLAST on NCBI

transcript from alignment at sc0006269:580..1189

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044816 ID=TCONS_00044816|Name=TCONS_00044816|organism=Clytia hemisphaerica|type=transcript|length=610bp|location=Sequence derived from alignment at sc0006269:580..1189 (Clytia hemisphaerica)
ttttgttggccccctcactttcaaaatcgtggCGCGGGCCCTGCTGTAAC
CTTTGATAAATTTAAAACTTCCCGAAATTATTTCTCGATATAAGTTATGG
TCTGTGACAGATTGATACCTTAGCCCTTCTATCTTGGGGGTAGTCTAAAC
GAATTTTTTGATgccttttgaaatatttatctgATCGACTTATAATTTTG
CAAGTGTGTACCAAATATGAATtgacatctttggttaaaatttcgGCATC
ATTGAgtcacctgatgacgtcatcgttctatcctctaactttttttcact
ttgatttttttctcaaaatttgcgAGGCAACTCCACGTGACATACATTTT
TGGGGCAGTAGGTCAAAATTTGCCACCTGTTggtatcgtgtattttacag
accggacAAAATTGCCTTTTTTGCCTAAACAGCCCTAGGATACTGCATCT
ACAGATTGGAAAATGCTTTGGACCTGAGATTTTGACAAGTgttaggcatt
gataatacaagctTGCAACCAAAATCTCAGCAACATGAGACAATCggtta
tgctgaaagtgagcattttggGTAAAATacggaccggtctgtaaaatacc
aaccattCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028425XLOC_028425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044816-exon-sc0006269-1491911889:580..1189TCONS_00044816-exon-sc0006269-1491911889:580..1189Clytia hemisphaericaexon
TCONS_00044816-exon-sc0006269-1510915933:580..1189TCONS_00044816-exon-sc0006269-1510915933:580..1189Clytia hemisphaericaexon
TCONS_00044816-exon-sc0006269-1575043694:580..1189TCONS_00044816-exon-sc0006269-1575043694:580..1189Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006269supercontigsc0006269:580..1189 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.414016	0.258826	0.901565	2.45155	0.238622	0	0.113746	0.212976	0.0745546	0.0924758	0	0.0589935	0.17832	0.675854	0.151802	0.269565	0.0664165	0.136749	0.474716	0.200263	0.171082	0	0	0	0.474949	0.339104	0.122513	0	0.0981983	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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