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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044815 ID=TCONS_00044815|Name=TCONS_00044815|organism=Clytia hemisphaerica|type=transcript|length=1263bp
CACGAGTCTCACAAGCTGTTCTCTCGGAAATCCGTGCGAACATTGTATTG
ATAGCGATCATCAAGACAAAGAACCGTGGAAAAGTTTTCTTATCCATTAT
CGAATAACTGAGAGCTATCatacaaaatttggaaaattcgaGAACGCCAA
ACAAAACATTGCCACCTTCAAGTCAACGACTCTGGAAGTGGTGCAAGTCT
GGTCTCATTAAAGCTCTAAAATTTAAGGGCGTTTATACGATACAAAAATG
GGCGTGGATATTACAACGCCCGGATACATGTTAACTATACTTGGACTGTT
ATACTCCATTATGCATCTAACCATTATAATACTCATACTAACTTCAAAAC
CCTTACGAACCGTCAAATCAAACCAACTGTTACTCAATCTCAGTTTCGGA
CATTTTTTTACTGGCTTTGTGACGTTTTTCGGACACGTGAGTGGGTTAAA
TCTAAGCGAAGTAGCTTATTTGGGATATACCTATGCCAACATATCTCTGG
TTGCTCTAACAATCGATCGGGCTTTGTATATATGTTGGCCTTTTAAATAT
CAACAATTTAATATCGCAGTTCATTCATGTTTGATGGGAATCAGTCCAGC
GTTAACGGTTTATCATCTGATTCGATTCATGATTGAAAATAAAGAGGATA
AGGATGTTTTAAAAGATAAAGAATCAATGCAATCATTTGTTTATGGTATC
ATATTTATTATGGCTATCCTACTTATAACAAATTCTGCTGTATTCTATAC
AGTGCAACGCCAAAAGAAGAAGATCAAATCGCTCCAAGTGTCAAATAATc
cacaacaaaacaaagatgaaCGGACAAAAGAGATTTTAGCATTTTATATA
TGTTTTGGATGTGCGTTCACATATATTGTCTTATGGTTACCAACTTTGGT
TCTAAAGGCGTTACAACTACATGGTCATTGGTCCTACGACGCTGATGACT
TTACTTGGGCCGTAGTTATTGCCAATTTGAATCCAATCTCAGATATTGTT
ATATTTGTATGGTTCaacaaagattttaaaaagCGAGTACGAAATTCAAG
ATGTTTTAAATCATATTTTCGTAAGAAGAACACAAGGAtgcaaattcaaa
atggcggcttTTCCTCAAATTCCACTGGTTCACGACAGACAAATGAATCT
AGTTGTTCCANAAAATGGCGGCTTTTCCTCAAATTCCACTGGTTCACGAC
AGACAAATGAATCTAGTTGTTCCAACTGCACCACAAATACATCGTTTTGA
TGTTATAtaactc Run BLAST on NCBI protein sequence of TCONS_00044815-protein >TCONS_00044815-protein ID=TCONS_00044815-protein|Name=TCONS_00044815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MGVDITTPGYMLTILGLLYSIMHLTIIILILTSKPLRTVKSNQLLLNLSF
GHFFTGFVTFFGHVSGLNLSEVAYLGYTYANISLVALTIDRALYICWPFK
YQQFNIAVHSCLMGISPALTVYHLIRFMIENKEDKDVLKDKESMQSFVYG
IIFIMAILLITNSAVFYTVQRQKKKIKSLQVSNNPQQNKDERTKEILAFY
ICFGCAFTYIVLWLPTLVLKALQLHGHWSYDADDFTWAVVIANLNPISDI
VIFVWFNKDFKKRVRNSRCFKSYFRKKNTRMQIQNGGFSSNSTGSRQTNE
SSCSXKWRLFLKFHWFTTDK Run BLAST on NCBI transcript from alignment at sc0006267:852..2114 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044815 ID=TCONS_00044815|Name=TCONS_00044815|organism=Clytia hemisphaerica|type=transcript|length=1263bp|location=Sequence derived from alignment at sc0006267:852..2114 (Clytia hemisphaerica)
gagttaTATAACATCAAAACGATGTATTTGTGGTGCAGTTGGAACAACTA
GATTCATTTGTCTGTCGTGAACCAGTGGAATTTGAGGAAAAGCCGCCATT
TTNTGGAACAACTAGATTCATTTGTCTGTCGTGAACCAGTGGAATTTGAG
GAAaagccgccattttgaatttgcaTCCTTGTGTTCTTCTTACGAAAATA
TGATTTAAAACATCTTGAATTTCGTACTCGctttttaaaatctttgttGA
ACCATACAAATATAACAATATCTGAGATTGGATTCAAATTGGCAATAACT
ACGGCCCAAGTAAAGTCATCAGCGTCGTAGGACCAATGACCATGTAGTTG
TAACGCCTTTAGAACCAAAGTTGGTAACCATAAGACAATATATGTGAACG
CACATCCAAAACATATATAAAATGCTAAAATCTCTTTTGTCCGttcatct
ttgttttgttgtggATTATTTGACACTTGGAGCGATTTGATCTTCTTCTT
TTGGCGTTGCACTGTATAGAATACAGCAGAATTTGTTATAAGTAGGATAG
CCATAATAAATATGATACCATAAACAAATGATTGCATTGATTCTTTATCT
TTTAAAACATCCTTATCCTCTTTATTTTCAATCATGAATCGAATCAGATG
ATAAACCGTTAACGCTGGACTGATTCCCATCAAACATGAATGAACTGCGA
TATTAAATTGTTGATATTTAAAAGGCCAACATATATACAAAGCCCGATCG
ATTGTTAGAGCAACCAGAGATATGTTGGCATAGGTATATCCCAAATAAGC
TACTTCGCTTAGATTTAACCCACTCACGTGTCCGAAAAACGTCACAAAGC
CAGTAAAAAAATGTCCGAAACTGAGATTGAGTAACAGTTGGTTTGATTTG
ACGGTTCGTAAGGGTTTTGAAGTTAGTATGAGTATTATAATGGTTAGATG
CATAATGGAGTATAACAGTCCAAGTATAGTTAACATGTATCCGGGCGTTG
TAATATCCACGCCCATTTTTGTATCGTATAAACGCCCTTAAATTTTAGAG
CTTTAATGAGACCAGACTTGCACCACTTCCAGAGTCGTTGACTTGAAGGT
GGCAATGTTTTGTTTGGCGTTCtcgaattttccaaattttgtatGATAGC
TCTCAGTTATTCGATAATGGATAAGAAAACTTTTCCACGGTTCTTTGTCT
TGATGATCGCTATCAATACAATGTTCGCACGGATTTCCGAGAGAACAGCT
TGTGAGACTCGTG Coding sequence (CDS) from alignment at sc0006267:852..2114 >TCONS_00044815 ID=TCONS_00044815|Name=TCONS_00044815|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0006267:852..2114 (Clytia hemisphaerica)
TCATTTGTCTGTCGTGAACCAGTGGAATTTGAGGAAAAGCCGCCATTTTN
TGGAACAACTAGATTCATTTGTCTGTCGTGAACCAGTGGAATTTGAGGAA
aagccgccattttgaatttgcaTCCTTGTGTTCTTCTTACGAAAATATGA
TTTAAAACATCTTGAATTTCGTACTCGctttttaaaatctttgttGAACC
ATACAAATATAACAATATCTGAGATTGGATTCAAATTGGCAATAACTACG
GCCCAAGTAAAGTCATCAGCGTCGTAGGACCAATGACCATGTAGTTGTAA
CGCCTTTAGAACCAAAGTTGGTAACCATAAGACAATATATGTGAACGCAC
ATCCAAAACATATATAAAATGCTAAAATCTCTTTTGTCCGttcatctttg
ttttgttgtggATTATTTGACACTTGGAGCGATTTGATCTTCTTCTTTTG
GCGTTGCACTGTATAGAATACAGCAGAATTTGTTATAAGTAGGATAGCCA
TAATAAATATGATACCATAAACAAATGATTGCATTGATTCTTTATCTTTT
AAAACATCCTTATCCTCTTTATTTTCAATCATGAATCGAATCAGATGATA
AACCGTTAACGCTGGACTGATTCCCATCAAACATGAATGAACTGCGATAT
TAAATTGTTGATATTTAAAAGGCCAACATATATACAAAGCCCGATCGATT
GTTAGAGCAACCAGAGATATGTTGGCATAGGTATATCCCAAATAAGCTAC
TTCGCTTAGATTTAACCCACTCACGTGTCCGAAAAACGTCACAAAGCCAG
TAAAAAAATGTCCGAAACTGAGATTGAGTAACAGTTGGTTTGATTTGACG
GTTCGTAAGGGTTTTGAAGTTAGTATGAGTATTATAATGGTTAGATGCAT
AATGGAGTATAACAGTCCAAGTATAGTTAACATGTATCCGGGCGTTGTAA
TATCCACGCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044815-exon-sc0006267-1491911889:852..2114 | TCONS_00044815-exon-sc0006267-1491911889:852..2114 | Clytia hemisphaerica | exon |
| TCONS_00044815-exon-sc0006267-1510915933:852..2114 | TCONS_00044815-exon-sc0006267-1510915933:852..2114 | Clytia hemisphaerica | exon |
| TCONS_00044815-exon-sc0006267-1575043694:852..2114 | TCONS_00044815-exon-sc0006267-1575043694:852..2114 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006267 | supercontig | sc0006267:852..2114 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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